RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CD244Q9BZW8 370 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 PREBQ9HCU5 417 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 EIF3KQ9UBQ5 218 aaKnown RBP11.09□□□□□ -0.63
PTPRF-203ENST00000372407 TAC3Q9UHF0 121 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 RNF6Q9Y252 685 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 UPK3BL1B0FP48 263 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 UPK3BL2E5RIL1 263 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 FANCGO15287 622 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF3P17036 446 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 MAGEA11P43364 429 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 OR3A3P47888 321 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 OR3A2P47893 321 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 CDH11P55287 796 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 TAS2R50P59544 299 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 MC1RQ01726 317 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 KCNC4Q03721 635 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 RASGEF1BQ0VAM2 473 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF234Q14588 700 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 NFKBIDQ8NI38 313 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 HDAC2Q92769 488 aaKnown RBP11.08□□□□□ -0.63
PTPRF-203ENST00000372407 NKD1Q969G9 470 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 CLCC1Q96S66 551 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 CCDC106Q9BWC9 280 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 CHIAQ9BZP6 476 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 OR51B5Q9H339 312 aa11.08□□□□□ -0.63
PTPRF-203ENST00000372407 UBR2Q8IWV8 1755 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 FAM170BA6NMN3 283 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 ATP5A1P25705 553 aaKnown RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 LEPRP48357 1165 aaKnown RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 RHEBL1Q8TAI7 183 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 LRRC20Q8TCA0 184 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 DENND1AQ8TEH3 1009 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 SLC7A6OSQ96CW6 309 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 MUS81Q96NY9 551 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 MND1Q9BWT6 205 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 NLE1Q9NVX2 485 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 OR6C70A6NIJ9 312 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 H0YAE9 185 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 GATBO75879 557 aaKnown RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 ITGB1P05556 798 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 CCND3P30281 292 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 MAZP56270 477 aaKnown RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 PTPRCAPQ14761 206 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 CYBRD1Q53TN4 286 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 LRRC66Q68CR7 880 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 GDF6Q6KF10 455 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF517Q6ZMY9 492 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 MMAAQ8IVH4 418 aaKnown RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 SDR16C5Q8N3Y7 309 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 TOMM5Q8N4H5 51 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 CAMKVQ8NCB2 501 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 OR2L5Q8NG80 312 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF461Q8TAF7 563 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 POF1BQ8WVV4 589 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 PSKH2Q96QS6 385 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 TRIM36Q9NQ86 728 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 CCM2LQ9NUG4 571 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 SEC14L4Q9UDX3 406 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 IL36AQ9UHA7 158 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 DFNA5O60443 496 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 PRMT3O60678 531 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 RAB36O95755 333 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF182P17025 639 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 MAP3K8P41279 467 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 ENTPD1P49961 510 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 PUM1Q14671 1186 aaKnown RBP eCLIP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 TECRLQ5HYJ1 363 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 CST9Q5W186 159 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 ULK3Q6PHR2 472 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 SLC22A16Q86VW1 577 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 RIT1Q92963 219 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 HHIPL1Q96JK4 782 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 C1orf74Q96LT6 269 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 C11orf84Q9BUA3 381 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-203ENST00000372407 TSSK6Q9BXA6 273 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 BTBD1Q9H0C5 482 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 DLGAP4Q9Y2H0 992 aa11.08□□□□□ -0.64
PTPRF-203ENST00000372407 ANKRD12Q6UB98 2062 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 SPEF2Q9C093 1822 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 OR1I1O60431 355 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 CYB5AP00167 134 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 GJA8P48165 433 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 GRIK2Q13002 908 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 PON3Q15166 354 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 PPP1R3AQ16821 1122 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 REEP3Q6NUK4 255 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 TAS1R3Q7RTX0 852 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 OR5T3Q8NGG3 340 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 CCDC107Q8WV48 283 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 COQ8BQ96D53 544 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 SLC30A2Q9BRI3 323 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 TMEM175Q9BSA9 504 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 NDC1Q9BTX1 674 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF639Q9UID6 485 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 UTS2RQ9UKP6 389 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 SCGNO76038 276 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 CDRT1O95170 752 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 RLN2P04090 185 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ITIH1P19827 911 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 CCKBRP32239 447 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms