RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 FRMD7Q6ZUT3 714 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 DEPDC4Q8N2C3 294 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SVOPQ8N4V2 548 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 HORMAD2Q8N7B1 307 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 DDHD1Q8NEL9 900 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 OR52E1Q8NGJ3 308 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SMPDL3BQ92485 455 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 LPGAT1Q92604 370 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 PPM1MQ96MI6 270 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 VPS35Q96QK1 796 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SLC6A17Q9H1V8 727 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 C12orf65Q9H3J6 166 aaKnown RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 TAS2R9Q9NYW1 312 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 C17orf113A0A1B0GUU1 675 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 AKAP8O43823 692 aaKnown RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 SLC18A1P54219 525 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 DSTNP60981 165 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 TRNP1Q6NT89 227 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 ADCK1Q86TW2 530 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 OR5AR1Q8NGP9 310 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 TRIM4Q9C037 500 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 B3GAT2Q9NPZ5 323 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 CLN6Q9NWW5 311 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 FAM120CQ9NX05 1096 aaKnown RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 MOCS1Q9NZB8 636 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SAMHD1Q9Y3Z3 626 aaKnown RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 BTN3A3O00478 584 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 PRLP01236 227 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 SLC7A1P30825 629 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 OR52E8Q6IFG1 317 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 ANKRD46Q86W74 232 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 AGBL5Q8NDL9 886 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 G6PC3Q9BUM1 346 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 OR8D2Q9GZM6 311 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 TMEM9BQ9NQ34 198 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 USE1Q9NZ43 259 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 AP1M2Q9Y6Q5 423 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 FAM92AA1XBS5 289 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 FAM86C2PA6NEL3 165 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 RPLP0P05388 317 aaKnown RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 CHRNGP07510 517 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 GIMD1P0DJR0 217 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 NDUFV2P19404 249 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 GRK6P43250 576 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 MC1RQ01726 317 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 HYAL2Q12891 473 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 SCARB2Q14108 478 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 ZNF267Q14586 743 aaPredicted RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 TECRLQ5HYJ1 363 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 MANEAQ5SRI9 462 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 EPHX4Q8IUS5 362 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 PIGXQ8TBF5 258 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 PIH1D2Q8WWB5 315 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 KCNK13Q9HB14 408 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 FEZF1A0PJY2 475 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 MYL12BO14950 172 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 TRIM24O15164 1050 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 NUAK1O60285 661 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 ACADSP16219 412 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 CD9P21926 228 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 CXCR1P25024 350 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 AK4P27144 223 aaPredicted RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 FOXN2P32314 431 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 CCR10P46092 362 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 RGRP47804 291 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 SIX1Q15475 284 aaPredicted RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 PDCD4Q53EL6 469 aaKnown RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 CEACAM20Q6UY09 585 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 OR6C2Q9NZP2 312 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 ELOA3DA6NLF2 546 aaPredicted RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 TNFRSF10CO14798 259 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 B4GALT3O60512 393 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 EPHA5P54756 1037 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 SLAMF1Q13291 335 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 ELOA3BQ3SY89 546 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 SDR16C5Q8N3Y7 309 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 ELOA3Q8NG57 546 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 SLC38A4Q969I6 547 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 TMCO6Q96DC7 493 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 HEMK1Q9Y5R4 338 aaPredicted RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 DRD2P14416 443 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 ADRA1AP35348 466 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 RPE65Q16518 533 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 VWA5B1Q5TIE3 1220 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 PPP1R3BQ86XI6 285 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP54-201ENST00000339859 ZNF354BQ96LW1 612 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 REEP4Q9H6H4 257 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 ARNT2Q9HBZ2 717 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 STOX2Q9P2F5 926 aaPredicted RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 CNOT6Q9ULM6 557 aaKnown RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 ZFR2Q9UPR6 939 aaKnown RBP9.79□□□□□ -0.84
USP54-201ENST00000339859 TPRKBQ9Y3C4 175 aa9.79□□□□□ -0.84
USP54-201ENST00000339859 JUNP05412 331 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 SAGP10523 405 aaPredicted RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 TCEA1P23193 301 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 MOSPD2Q8NHP6 518 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 TCTN2Q96GX1 697 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 S100A13Q99584 98 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 EPYCQ99645 322 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms