RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 MEX3DQ86XN8 651 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 SIAH1Q8IUQ4 282 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 DTNBP1Q96EV8 351 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 GPATCH1Q9BRR8 931 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 UCK2Q9BZX2 261 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PCBD2Q9H0N5 130 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 KCNK12Q9HB15 430 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 IL20RAQ9UHF4 553 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 IL1RNP18510 177 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PTDSS1P48651 473 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 DUSP3P51452 185 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 CRISP3P54108 245 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 BTBD16Q32M84 506 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 LRIT3Q3SXY7 679 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 TRABD2AQ86V40 505 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 TICAM1Q8IUC6 712 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ZNF283Q8N7M2 679 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 GIPC3Q8TF64 312 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 SLC5A11Q8WWX8 675 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 LRRC58Q96CX6 371 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 TRAPPC9Q96Q05 1148 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 Q9N2J8 555 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PPP4R1LQ9P1A2 415 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 PTRH2Q9Y3E5 179 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 VIRMAQ69YN4 1812 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 NPIPA5A0A0B4J1W7 369 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 NPIPA7E9PJI5 369 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 NPIPA8P0DM63 369 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ABCA11PQ4W5N1 156 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 ZNF805Q5CZA5 627 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 STRA6Q9BX79 667 aa7.56□□□□□ -1.2
SCN9A-201ENST00000303354 LIN28AQ9H9Z2 209 aaKnown RBP7.56□□□□□ -1.2
SCN9A-201ENST00000303354 TMEM131LA2VDJ0 1609 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 HSPA12AO43301 675 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 PGLSO95336 258 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 NADKO95544 446 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 LCP2Q13094 533 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 TREML1Q86YW5 311 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 KCTD13Q8WZ19 329 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ZC3HAV1LQ96H79 300 aaKnown RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 GATA5Q9BWX5 397 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ZNF717Q9BY31 904 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 CNOT4O95628 575 aaKnown RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 SSX6Q7RTT6 188 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 TOE1Q96GM8 510 aaKnown RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 FUBP3Q96I24 572 aaKnown RBP eCLIP7.55□□□□□ -1.26e-6■■■■□ 23.4
SCN9A-201ENST00000303354 AKTIPQ9H8T0 292 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 L2HGDHQ9H9P8 463 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ENAMQ9NRM1 1142 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 PISDQ9UG56 409 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 MAGEL2Q9UJ55 1249 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 RUVBL1Q9Y265 456 aaKnown RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 IGKV6D-41A0A0C4DH26 115 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 RAD1O60671 282 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 GJB3O75712 270 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ECHS1P30084 290 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 NTSR1P30989 418 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 C5orf22Q49AR2 442 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 FLYWCH1Q4VC44 716 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 SPDYCQ5MJ68 293 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 LIPIQ6XZB0 460 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 WDR53Q7Z5U6 358 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 RNF130Q86XS8 419 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ARL10Q8N8L6 244 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 CNEP1R1Q8N9A8 125 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 BEX2Q9BXY8 128 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 BEX1Q9HBH7 125 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 FAM118AQ9NWS6 357 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 REV1Q9UBZ9 1251 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 C19orf25Q9UFG5 118 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ACAD8Q9UKU7 415 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 A0A1W2PQ72 361 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ILVBLA1L0T0 632 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 OR52A4PA6NMU1 304 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ABOP16442 354 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 ADH7P40394 386 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 RPS6KA3P51812 740 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 DENND5AQ6IQ26 1287 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 Q6ZSR6 202 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 TEX19Q8NA77 164 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 OR6N2Q8NGY6 317 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 DIRAS2Q96HU8 199 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 OR2M4Q96R27 311 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 PEBP4Q96S96 227 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 LMO7Q8WWI1 1683 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 CDC14CA4D256 554 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 HIDE1A8MVS5 230 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 CSF2P04141 144 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 DLDP09622 509 aaKnown RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 LRRC26Q2I0M4 334 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 NAIF1Q69YI7 327 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-201ENST00000303354 TRAPPC6BQ86SZ2 158 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 IRAK3Q9Y616 596 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 A0A087WXM4 84 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 TMEM63AO94886 807 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 CD79AP11912 226 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 C6P13671 934 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 EDNRBP24530 442 aa7.55□□□□□ -1.2
SCN9A-201ENST00000303354 OR3A3P47888 321 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms