RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 USP39Q53GS9 565 aaKnown RBP15.75■□□□□ 0.11
CTCF-201ENST00000264010 ARMCX4Q5H9R4 360 aa15.75■□□□□ 0.11
CTCF-201ENST00000264010 NHSL2Q5HYW2 709 aa15.75■□□□□ 0.11
CTCF-201ENST00000264010 MSANTD1Q6ZTZ1 278 aa15.75■□□□□ 0.11
CTCF-201ENST00000264010 SPRED1Q7Z699 444 aa15.75■□□□□ 0.11
CTCF-201ENST00000264010 NRSN1Q8IZ57 195 aa15.75■□□□□ 0.11
CTCF-201ENST00000264010 C11orf65Q8NCR3 313 aa15.75■□□□□ 0.11
CTCF-201ENST00000264010 REXO5Q96IC2 774 aaKnown RBP15.75■□□□□ 0.11
CTCF-201ENST00000264010 DLGAP4Q9Y2H0 992 aa15.75■□□□□ 0.11
CTCF-201ENST00000264010 CXorf51AA0A1B0GTR3 108 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 FAM25AB3EWG3 89 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 FAM25CB3EWG5 89 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 FAM25GB3EWG6 89 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 PI15O43692 258 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 UGDHO60701 494 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 CPNE3O75131 537 aaKnown RBP15.74■□□□□ 0.11
CTCF-201ENST00000264010 ALDH9A1P49189 494 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 C2orf80Q0P641 193 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 ZNF829Q3KNS6 432 aaPredicted RBP15.74■□□□□ 0.11
CTCF-201ENST00000264010 GGTA1PQ4G0N0 100 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 SLC22A16Q86VW1 577 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 ZNF583Q96ND8 569 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 ACAT2Q9BWD1 397 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 BEX2Q9BXY8 128 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 SOX17Q9H6I2 414 aaPredicted RBP15.74■□□□□ 0.11
CTCF-201ENST00000264010 PCDHGB5Q9Y5G0 923 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 BCKDKO14874 412 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 UGT2B11O75310 529 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 PCSK6P29122 969 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 SLBPQ14493 270 aaKnown RBP eCLIP15.74■□□□□ 0.11
CTCF-201ENST00000264010 TAB1Q15750 504 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 HKDC1Q2TB90 917 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 FAM214AQ32MH5 1076 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 TRIM40Q6P9F5 258 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 ENPP6Q6UWR7 440 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 CRIPAKQ8N1N5 446 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 USP7Q93009 1102 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 RAD51AP1Q96B01 352 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 QRFPRQ96P65 431 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 HPRP00739 348 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 SDC1P18827 310 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 ZXDBP98169 803 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 PPP1R8Q12972 351 aaKnown RBP15.74■□□□□ 0.11
CTCF-201ENST00000264010 CES5AQ6NT32 575 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 DPPA4Q7L190 304 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 BPIFB1Q8TDL5 484 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 ECHDC3Q96DC8 303 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 SMURF2Q9HAU4 748 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 ASIC5Q9NY37 505 aa15.74■□□□□ 0.11
CTCF-201ENST00000264010 PTPRDP23468 1912 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 POP7O75817 140 aaKnown RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 EPHX1P07099 455 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 EPCAMP16422 314 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 PPM1FP49593 454 aaPredicted RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 SUSD1Q6UWL2 747 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 C17orf64Q86WR6 236 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 PMEPA1Q969W9 287 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 MUS81Q96NY9 551 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 TPK1Q9H3S4 243 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 SLC13A4Q9UKG4 626 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 KIAA0100Q14667 2235 aaKnown RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 RETP07949 1114 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 HLA-EP13747 358 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 HRH2P25021 359 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 AQP1P29972 269 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 GRIA2P42262 883 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 SLC36A3Q495N2 470 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 RBM48Q5RL73 367 aaKnown RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 GALNT5Q7Z7M9 940 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 SLC44A2Q8IWA5 706 aaPredicted RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 L3MBTL4Q8NA19 623 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 MCFD2Q8NI22 146 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 NLNQ9BYT8 704 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 KRT84Q9NSB2 600 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 TBCCD1Q9NVR7 557 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 ZNF282Q9UDV7 671 aaPredicted RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 POU2F3Q9UKI9 436 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 DOCK4Q8N1I0 1966 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 ARHGEF33A8MVX0 844 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 hCG_2039718K7EN88 272 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 GAPDHSO14556 408 aaPredicted RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 MMP20O60882 483 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 FAM20BO75063 409 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 RPL10P27635 214 aaKnown RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 CYP4F2P78329 520 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 SLC13A2Q13183 592 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 LILRA6Q6PI73 481 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 PLPP6Q8IY26 295 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 OR8H1Q8NGG4 311 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 ZHX1-C8orf76Q96EF9 292 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 MAGIXQ9H6Y5 334 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 IMPAD1Q9NX62 359 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 USE1Q9NZ43 259 aa15.73■□□□□ 0.11
CTCF-201ENST00000264010 PDP1Q9P0J1 537 aaPredicted RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 STOX2Q9P2F5 926 aaPredicted RBP15.73■□□□□ 0.11
CTCF-201ENST00000264010 ASPDHA6ND91 283 aa15.72■□□□□ 0.11
CTCF-201ENST00000264010 I3L521 148 aa15.72■□□□□ 0.11
CTCF-201ENST00000264010 GNAO1P09471 354 aa15.72■□□□□ 0.11
CTCF-201ENST00000264010 AMD1P17707 334 aa15.72■□□□□ 0.11
CTCF-201ENST00000264010 DCDC1P59894 354 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms