RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 ZNF592Q92610 1267 aa13.12□□□□□ -0.31
PNKP-228ENST00000637325 CPNE1Q99829 537 aa13.12□□□□□ -0.31
PNKP-228ENST00000637325 EGFL8Q99944 293 aa13.12□□□□□ -0.31
PNKP-228ENST00000637325 MKKSQ9NPJ1 570 aaPredicted RBP13.12□□□□□ -0.31
PNKP-228ENST00000637325 SLAMF7Q9NQ25 335 aa13.12□□□□□ -0.31
PNKP-228ENST00000637325 C14orf105Q9NVL8 296 aa13.12□□□□□ -0.31
PNKP-228ENST00000637325 IKZF3Q9UKT9 509 aa13.12□□□□□ -0.31
PNKP-228ENST00000637325 IGLV3-12A0A075B6K2 115 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 TCRBV9S1A1TA0A576 114 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 CXorf49A8MYA2 514 aaPredicted RBP13.11□□□□□ -0.31
PNKP-228ENST00000637325 FOXS1O43638 330 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 ALOX12BO75342 701 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 ACPPP15309 386 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 GP5P40197 560 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 SLC26A3P40879 764 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 BCL6P41182 706 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 MAGEA4P43358 317 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 FOXK1P85037 733 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 SLC7A5Q01650 507 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 CSHL1Q14406 222 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 USP10Q14694 798 aaKnown RBP13.11□□□□□ -0.31
PNKP-228ENST00000637325 VN1R4Q7Z5H5 301 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 ADAMTSL2Q86TH1 951 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 ATCAYQ86WG3 371 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 CEP97Q8IW35 865 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 PARP9Q8IXQ6 854 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 MFSD9Q8NBP5 474 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 ZCCHC10Q8TBK6 192 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 FBXO25Q8TCJ0 367 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 SLC13A3Q8WWT9 602 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 SLC5A11Q8WWX8 675 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 MACROD1Q9BQ69 325 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 FAM129AQ9BZQ8 928 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 PHACTR1Q9C0D0 580 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 POPDC3Q9HBV1 291 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 ANKHQ9HCJ1 492 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 PLAAQ9Y263 795 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 MTO1Q9Y2Z2 717 aaKnown RBP13.11□□□□□ -0.31
PNKP-228ENST00000637325 MAP4K5Q9Y4K4 846 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 OARD1Q9Y530 152 aa13.11□□□□□ -0.31
PNKP-228ENST00000637325 ZGRF1Q86YA3 2104 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 FAM159BA6NKW6 160 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 IDSB3KWA1 339 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 H0YIG0 161 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 OR1F1O43749 312 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 LCMT2O60294 686 aaKnown RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 SERPIND1P05546 499 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 SLC35G6P0C7Q6 338 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 SOX8P57073 446 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 GPX6P59796 221 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 MAT1AQ00266 395 aaKnown RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 MEF2AQ02078 507 aaPredicted RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 TRADDQ15628 312 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 TSNQ15631 228 aaKnown RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 SYT16Q17RD7 645 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 MFSD4BQ5TF39 518 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 FAAH2Q6GMR7 532 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 JMJD6Q6NYC1 403 aaPredicted RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 CYS1Q717R9 158 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 LAPTM4BQ86VI4 370 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 THOC6Q86W42 341 aaKnown RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 ZADH2Q8N4Q0 377 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 ARHGEF39Q8N4T4 335 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 RBMXL3Q8N7X1 1067 aaKnown RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 PPM1NQ8N819 430 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 AMER3Q8N944 861 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 ABHD11Q8NFV4 315 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 OR11G2Q8NGC1 345 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 OR9A4Q8NGU2 314 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 CPT1CQ8TCG5 803 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 ANKRD49Q8WVL7 239 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 PNPLA2Q96AD5 504 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 C8orf44Q96CB5 159 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 OR4K3Q96R72 315 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 RBBP8Q99708 897 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 ZNF552Q9H707 407 aaPredicted RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 CAB39LQ9H9S4 337 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 LUZP4Q9P127 313 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 MAP10Q9P2G4 905 aa13.1□□□□□ -0.31
PNKP-228ENST00000637325 MRPS2Q9Y399 296 aaKnown RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 FLNBO75369 2602 aaKnown RBP13.1□□□□□ -0.31
PNKP-228ENST00000637325 NSG1A0A0A6YYJ2 146 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 TRBC2A0A5B9 178 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 NSA2O95478 260 aaKnown RBP13.09□□□□□ -0.31
PNKP-228ENST00000637325 HPP00738 406 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 STMN1P16949 149 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 IL1RNP18510 177 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 STX2P32856 288 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 SPRP35270 261 aaPredicted RBP13.09□□□□□ -0.31
PNKP-228ENST00000637325 HNMTP50135 292 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 CDKL1Q00532 357 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 EEF1A2Q05639 463 aaKnown RBP13.09□□□□□ -0.31
PNKP-228ENST00000637325 PPP1R3AQ16821 1122 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 WHAMMP3Q1A5X7 153 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 ZXDCQ2QGD7 858 aaPredicted RBP13.09□□□□□ -0.31
PNKP-228ENST00000637325 CATSPEREQ5SY80 951 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 GRTP1Q5TC63 336 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 AGAP7PQ5VUJ5 663 aa13.09□□□□□ -0.31
PNKP-228ENST00000637325 TMEM214Q6NUQ4 689 aaKnown RBP13.09□□□□□ -0.31
PNKP-228ENST00000637325 ZDHHC24Q6UX98 284 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms