RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 GPR18Q14330 331 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 PLCL1Q15111 1095 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 MAMSTRQ6ZN01 415 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 ARMCX6Q7L4S7 300 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 PLD3Q8IV08 490 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 RIMKLAQ8IXN7 391 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 NAGSQ8N159 534 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 FBXL6Q8N531 539 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 DPP10Q8N608 796 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 SLC37A2Q8TED4 501 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 SLC13A3Q8WWT9 602 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 GFM2Q969S9 779 aaKnown RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 PITHD1Q9GZP4 211 aaPredicted RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 CPNE7Q9UBL6 633 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 CEP192Q8TEP8 1941 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 KIR2DS5A0A0G2JLQ3 304 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 A0A0G2JNG1 304 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 ANKDD1BA6NHY2 528 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 OR5K4A6NMS3 321 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 KIR2DS3K7RE56 304 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 TRIM38O00635 465 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 LCMT2O60294 686 aaKnown RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 CSF2P04141 144 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 IL6P05231 212 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 PGRP06401 933 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 NME1P15531 152 aaKnown RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 ME2P23368 584 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 PTX3P26022 381 aaPredicted RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 TIA1P31483 386 aaKnown RBP eCLIP16.18■□□□□ 0.18
CLN3-252ENST00000636907 HNRNPH1P31943 449 aaKnown RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 ERFP50548 548 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 CYP4F2P78329 520 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 FOXM1Q08050 763 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 KIR2DS5Q14953 304 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 PRMT9Q6P2P2 845 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 FAM156AQ8NDB6 213 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 POT1Q9NUX5 634 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 SIRT5Q9NXA8 310 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 ADGRE2Q9UHX3 823 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 ARHGEF17Q96PE2 2063 aaPredicted RBP16.17■□□□□ 0.18
CLN3-252ENST00000636907 AKAP10O43572 662 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 OR1F1O43749 312 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 PCDH7O60245 1069 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 CCNDBP1O95273 360 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 ANXA4P09525 319 aaPredicted RBP16.17■□□□□ 0.18
CLN3-252ENST00000636907 SLC6A2P23975 617 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 CMPK1P30085 196 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 MSX2P35548 267 aaPredicted RBP16.17■□□□□ 0.18
CLN3-252ENST00000636907 PHC1P78364 1004 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 SIGLEC14Q08ET2 396 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 KIAA1614Q5VZ46 1190 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 GALNT18Q6P9A2 607 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 COMMD6Q7Z4G1 85 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 DHDDSQ86SQ9 333 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 METTL4Q8N3J2 472 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 FAM46DQ8NEK8 389 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 CDC26Q8NHZ8 85 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 WDR48Q8TAF3 677 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 ZFPM2Q8WW38 1151 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 TESCQ96BS2 214 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 NECAB3Q96P71 396 aaPredicted RBP16.17■□□□□ 0.18
CLN3-252ENST00000636907 DPH7Q9BTV6 452 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 MS4A8Q9BY19 250 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 TMEM184CQ9NVA4 438 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 ABCD2Q9UBJ2 740 aa16.17■□□□□ 0.18
CLN3-252ENST00000636907 ABCA7Q8IZY2 2146 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 PRORSD1PA6NEY8 169 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 NME4O00746 187 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 MAP3K7O43318 606 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 KRT36O76013 467 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 PSMG1O95456 288 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 TCN1P20061 433 aaPredicted RBP16.16■□□□□ 0.18
CLN3-252ENST00000636907 PRPS1L1P21108 318 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 SERPINB1P30740 379 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 S100A3P33764 101 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 NXPH1P58417 271 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 CCNIQ14094 377 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 SAMD4BQ5PRF9 694 aaKnown RBP16.16■□□□□ 0.18
CLN3-252ENST00000636907 DLEU7Q6UYE1 221 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 SLC15A3Q8IY34 581 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 DNAJB14Q8TBM8 379 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 ZDHHC1Q8WTX9 485 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 DNASE2BQ8WZ79 361 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 OR52E6Q96RD3 313 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 TRIM8Q9BZR9 551 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 TWSG1Q9GZX9 223 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 DUSP15Q9H1R2 295 aaPredicted RBP16.16■□□□□ 0.18
CLN3-252ENST00000636907 CMTM6Q9NX76 183 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 CD300AQ9UGN4 299 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 KLHL20Q9Y2M5 609 aa16.16■□□□□ 0.18
CLN3-252ENST00000636907 GNG14A0A1W2PPG7 69 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 TRBC2A0A5B9 178 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 H0Y3Z8 333 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 HAT1O14929 419 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 PRMT3O60678 531 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 NPPAP01160 153 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 HOXB3P14651 431 aaPredicted RBP16.15■□□□□ 0.18
CLN3-252ENST00000636907 BCL6P41182 706 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 FNTBP49356 437 aa16.15■□□□□ 0.18
CLN3-252ENST00000636907 C21orf58P58505 322 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms