RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 AIF1LQ9BQI0 150 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 NLNQ9BYT8 704 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 PRM3Q9NNZ6 103 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 TMEM216Q9P0N5 145 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 NDOR1Q9UHB4 597 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 DCDC2Q9UHG0 476 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 LGALS13Q9UHV8 139 aa17.28■□□□□ 0.36
CLN3-239ENST00000628023 SETXQ7Z333 2677 aaKnown RBP17.28■□□□□ 0.36
CLN3-239ENST00000628023 K7EPI3 171 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 COPEO14579 308 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 H2AFYO75367 372 aaKnown RBP17.27■□□□□ 0.36
CLN3-239ENST00000628023 KRT4P19013 534 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 VARSP26640 1264 aaKnown RBP17.27■□□□□ 0.36
CLN3-239ENST00000628023 ARSFP54793 590 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 GPS2Q13227 327 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 LINC00303Q3SY05 128 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 CEP85LQ5SZL2 805 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 C1orf189Q5VU69 101 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 C16orf46Q6P387 395 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 C4orf33Q8N1A6 199 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 EXD3Q8N9H8 876 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 NKD1Q969G9 470 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 THAP11Q96EK4 314 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 OR2A5Q96R48 311 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 SPRY4Q9C004 299 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 IQCGQ9H095 443 aaKnown RBP17.27■□□□□ 0.36
CLN3-239ENST00000628023 CENPHQ9H3R5 247 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 PADI1Q9ULC6 663 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 ASB1Q9Y576 335 aa17.27■□□□□ 0.36
CLN3-239ENST00000628023 TNPO3Q9Y5L0 923 aaKnown RBP17.27■□□□□ 0.36
CLN3-239ENST00000628023 TRBC2A0A5B9 178 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 TXNDC9O14530 226 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 RGS16O15492 202 aaPredicted RBP17.26■□□□□ 0.35
CLN3-239ENST00000628023 OR1F1O43749 312 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 KLK8O60259 260 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 STATHP02808 62 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 EPB42P16452 691 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 AGXTP21549 392 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 ALAS2P22557 587 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 CXCR2P25025 360 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 BCL6P41182 706 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 STAT5AP42229 794 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 CCT5P48643 541 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 REEP5Q00765 189 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 ZNF844Q08AG5 666 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 ABHD18Q0P651 414 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 SLBPQ14493 270 aaKnown RBP eCLIP17.26■□□□□ 0.35
CLN3-239ENST00000628023 RBBP5Q15291 538 aaKnown RBP17.26■□□□□ 0.35
CLN3-239ENST00000628023 FAM214AQ32MH5 1076 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 XKR6Q5GH73 641 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 YOD1Q5VVQ6 348 aaPredicted RBP17.26■□□□□ 0.35
CLN3-239ENST00000628023 ATG9BQ674R7 924 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 RHBDD2Q6NTF9 364 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 TTLL10Q6ZVT0 673 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 SRRM1Q8IYB3 904 aaKnown RBP17.26■□□□□ 0.35
CLN3-239ENST00000628023 KRT78Q8N1N4 520 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 TEX9Q8N6V9 391 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 SLC38A9Q8NBW4 561 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 PROKR1Q8TCW9 393 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 ZNF285Q96NJ3 590 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 ZIM3Q96PE6 472 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 TMEM109Q9BVC6 243 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 GPN2Q9H9Y4 310 aaPredicted RBP17.26■□□□□ 0.35
CLN3-239ENST00000628023 LHX9Q9NQ69 397 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 CUTCQ9NTM9 273 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 ARGLU1Q9NWB6 273 aaPredicted RBP17.26■□□□□ 0.35
CLN3-239ENST00000628023 DHCR7Q9UBM7 475 aaKnown RBP17.26■□□□□ 0.35
CLN3-239ENST00000628023 SPTA1P02549 2419 aa17.26■□□□□ 0.35
CLN3-239ENST00000628023 HYKKA2RU49 373 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 H3BMH7 237 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 STX16-NPEPL1H3BU86 382 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 MEN1O00255 615 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 STX16O14662 325 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 SERPIND1P05546 499 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 C1GALT1C1LP0DN25 315 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 EEF1DP29692 281 aaKnown RBP17.25■□□□□ 0.35
CLN3-239ENST00000628023 ARL1P40616 181 aaPredicted RBP17.25■□□□□ 0.35
CLN3-239ENST00000628023 PIK3CGP48736 1102 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 KCNC4Q03721 635 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 TBR1Q16650 682 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 HKDC1Q2TB90 917 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 SLCO4C1Q6ZQN7 724 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 CROCCP2Q86T23 111 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 ASPGQ86U10 573 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 DSELQ8IZU8 1212 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 CCDC63Q8NA47 563 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 MFSD9Q8NBP5 474 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 OR4K1Q8NGD4 311 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 LRFN5Q96NI6 719 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 SMC6Q96SB8 1091 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 RUFY1Q96T51 708 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 SPNS1Q9H2V7 528 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 CLMPQ9H6B4 373 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 CROTQ9UKG9 612 aa17.25■□□□□ 0.35
CLN3-239ENST00000628023 RUVBL1Q9Y265 456 aaKnown RBP17.25■□□□□ 0.35
CLN3-239ENST00000628023 ASH1LQ9NR48 2969 aaKnown RBP17.25■□□□□ 0.35
CLN3-239ENST00000628023 KCNE1BA0A087WTH5 132 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 A0A1B0GX78 115 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 FITM1A5D6W6 292 aa17.24■□□□□ 0.35
CLN3-239ENST00000628023 LRRC14BA6NHZ5 514 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms