RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MMP20O60882 483 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 REM1O75628 298 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 C6orf47O95873 294 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 TYRP14679 529 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 GATMP50440 423 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 CDKN2DP55273 166 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 AP3S2P59780 193 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 DCDC1P59894 354 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 VBP1P61758 197 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 HSF2Q03933 536 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 CSTF1Q05048 431 aaKnown RBP13.59□□□□□ -0.23
CPSF1-212ENST00000616140 FCHO2Q0JRZ9 810 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 PDGFRLQ15198 375 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF630Q2M218 657 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-212ENST00000616140 NOXRED1Q6NXP6 359 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 ARL9Q6T311 187 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 TRIM74Q86UV6 250 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 MARVELD2Q8N4S9 558 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 RAB8BQ92930 207 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 ZSWIM3Q96MP5 696 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 UCK2Q9BZX2 261 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 ADAMTS10Q9H324 1103 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 CCDC59Q9P031 241 aaKnown RBP13.59□□□□□ -0.23
CPSF1-212ENST00000616140 RHCGQ9UBD6 479 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 PCDHGA10Q9Y5H3 936 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 ARID1BQ8NFD5 2236 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-212ENST00000616140 A0A0J9YVX5 310 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 ZCWPW2A0A1B0GU75 182 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 LSM1O15116 133 aaKnown RBP13.59□□□□□ -0.23
CPSF1-212ENST00000616140 AKAP8O43823 692 aaKnown RBP13.59□□□□□ -0.23
CPSF1-212ENST00000616140 RING1Q06587 406 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 LASP1Q14847 261 aaKnown RBP13.59□□□□□ -0.23
CPSF1-212ENST00000616140 SMYD5Q6GMV2 418 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 PSAPL1Q6NUJ1 521 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 MARCH9Q86YJ5 346 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.59□□□□□ -0.23
CPSF1-212ENST00000616140 RTP4Q96DX8 246 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 CRELD1Q96HD1 420 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 RIPOR3Q96MK2 946 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 INSL5Q9Y5Q6 135 aa13.59□□□□□ -0.23
CPSF1-212ENST00000616140 OAS1P00973 400 aaKnown RBP13.58□□□□□ -0.23
CPSF1-212ENST00000616140 ITGB1P05556 798 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 CD2P06729 351 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 AKR1D1P51857 326 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 SPATS1Q496A3 300 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 EIPR1Q53HC9 387 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 ASB18Q6ZVZ8 466 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 KRTCAP2Q8N6L1 136 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 TMEM40Q8WWA1 233 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 GPR62Q9BZJ7 368 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 SMG9Q9H0W8 520 aaKnown RBP13.58□□□□□ -0.23
CPSF1-212ENST00000616140 ELAC1Q9H777 363 aaKnown RBP13.58□□□□□ -0.23
CPSF1-212ENST00000616140 TCF7L1Q9HCS4 588 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 AIG1Q9NVV5 245 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 UTS2RQ9UKP6 389 aa13.58□□□□□ -0.23
CPSF1-212ENST00000616140 BCKDHAP12694 445 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 CCND3P30281 292 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-212ENST00000616140 MEF2AQ02078 507 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-212ENST00000616140 C6orf141Q5SZD1 244 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 NATD1Q8N6N6 113 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 NEK7Q8TDX7 302 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 MAPKAP1Q9BPZ7 522 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 RNF6Q9Y252 685 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 HCN4Q9Y3Q4 1203 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 ANXA2P2A6NMY6 339 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 NDUFS4O43181 175 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF623O75123 536 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 ANXA2P07355 339 aaKnown RBP13.58□□□□□ -0.24
CPSF1-212ENST00000616140 IQCF3P0C7M6 154 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 SLC2A2P11168 524 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-212ENST00000616140 GNALP38405 381 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 PPIGQ13427 754 aaKnown RBP eCLIP13.58□□□□□ -0.241e-9■■■■□ 22
CPSF1-212ENST00000616140 TUBA3CQ13748 450 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 KLHL24Q6TFL4 600 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 SLC22A16Q86VW1 577 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 KLHL36Q8N4N3 616 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 KDM1BQ8NB78 822 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 PPP1R14BQ96C90 147 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 TMEM175Q9BSA9 504 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 TRIM2Q9C040 744 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 RMI1Q9H9A7 625 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 MEAF6Q9HAF1 191 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 NEUROD4Q9HD90 331 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 DNAJC27Q9NZQ0 273 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 MYH7BA7E2Y1 1941 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 SMSP52788 366 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 OR4D2P58180 307 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF763Q0D2J5 394 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 ATP6AP1Q15904 470 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 IFNLR1Q8IU57 520 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-212ENST00000616140 TCEANCQ8N8B7 351 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 BARD1Q99728 777 aaKnown RBP13.58□□□□□ -0.24
CPSF1-212ENST00000616140 SLC22A4Q9H015 551 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 TNFRSF10DQ9UBN6 386 aa13.58□□□□□ -0.24
CPSF1-212ENST00000616140 KIAA0100Q14667 2235 aaKnown RBP13.57□□□□□ -0.24
CPSF1-212ENST00000616140 SMIM30A4D0T7 59 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 PTGESO14684 152 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 GALTP07902 379 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 GSTM3P21266 225 aa13.57□□□□□ -0.24
CPSF1-212ENST00000616140 PROZP22891 400 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms