RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZNF180Q9UJW8 692 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 PTBP2Q9UKA9 531 aaKnown RBP15.35■□□□□ 0.05
TRIM28-213ENST00000598355 SLC22A14Q9Y267 594 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 MRPS2Q9Y399 296 aaKnown RBP15.35■□□□□ 0.05
TRIM28-213ENST00000598355 FEZF1A0PJY2 475 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 EIF4E1BA6NMX2 242 aaKnown RBP15.34■□□□□ 0.05
TRIM28-213ENST00000598355 KERAO60938 352 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 C2P06681 752 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 LTA4HP09960 611 aaKnown RBP15.34■□□□□ 0.05
TRIM28-213ENST00000598355 GRK3P35626 688 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 KCNC1P48547 511 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 SERPINB8P50452 374 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 ATP1A4Q13733 1029 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 E2F2Q14209 437 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 C18orf21Q32NC0 220 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-213ENST00000598355 CATSPEREQ5SY80 951 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 MROH9Q5TGP6 573 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 SULT1C3Q6IMI6 304 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 PPP1R32Q7Z5V6 425 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 TBC1D1Q86TI0 1168 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-213ENST00000598355 GPSM1Q86YR5 675 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 METTL27Q8N6F8 245 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-213ENST00000598355 TMEM102Q8N9M5 508 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-213ENST00000598355 RHEBL1Q8TAI7 183 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 UBTD2Q8WUN7 234 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 ALKBH8Q96BT7 664 aaKnown RBP15.34■□□□□ 0.05
TRIM28-213ENST00000598355 PAFAH2Q99487 392 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 NMRAL1Q9HBL8 299 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 MLXIPLQ9NP71 852 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 CDC14AQ9UNH5 594 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 KCNE2Q9Y6J6 123 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 MAU2Q9Y6X3 613 aa15.34■□□□□ 0.05
TRIM28-213ENST00000598355 SPENQ96T58 3664 aaKnown RBP15.33■□□□□ 0.05
TRIM28-213ENST00000598355 HELZ2Q9BYK8 2649 aaKnown RBP15.33■□□□□ 0.05
TRIM28-213ENST00000598355 A0A087WUV0 522 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-213ENST00000598355 A0A087X1B8 175 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 A0A1W2PQ72 361 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 PRPF4O43172 522 aaKnown RBP eCLIP15.33■□□□□ 0.04
TRIM28-213ENST00000598355 NSA2O95478 260 aaKnown RBP15.33■□□□□ 0.04
TRIM28-213ENST00000598355 RHOXF2BP0C7M4 288 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 MTHFD2P13995 350 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 TFEBP19484 476 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 FBLP22087 321 aaKnown RBP15.33■□□□□ 0.04
TRIM28-213ENST00000598355 MMP11P24347 488 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 AHRP35869 848 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 SCTRP47872 440 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 IRF9Q00978 393 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 MEF2AQ02078 507 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-213ENST00000598355 NDUFA9Q16795 377 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 TCTN3Q6NUS6 607 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 NXPE4Q6UWF7 544 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 SLCO4C1Q6ZQN7 724 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 RAPH1Q70E73 1250 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 MED25Q71SY5 747 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 TRMT10CQ7L0Y3 403 aaKnown RBP15.33■□□□□ 0.04
TRIM28-213ENST00000598355 TMPRSS11BQ86T26 416 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 ASPGQ86U10 573 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 AFAP1L2Q8N4X5 818 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 CAMKVQ8NCB2 501 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 ZNF740Q8NDX6 193 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 C9orf43Q8TAL5 461 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-213ENST00000598355 STAG3L4Q8TBR4 150 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 STT3BQ8TCJ2 826 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 DCAKDQ8WVC6 231 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 KCTD4Q8WVF5 259 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 ABHD17AQ96GS6 310 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 TSNARE1Q96NA8 513 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 GPR78Q96P69 363 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 RHOXF2Q9BQY4 288 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 TGIF2Q9GZN2 237 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 ING2Q9H160 280 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 EPB41L4BQ9H329 900 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 EHD1Q9H4M9 534 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 ALG9Q9H6U8 611 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 GPRC5BQ9NZH0 403 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 NUDT4Q9NZJ9 180 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 TLK1Q9UKI8 766 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 ACOT9Q9Y305 439 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 DYRK1BQ9Y463 629 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 MAP4K5Q9Y4K4 846 aa15.33■□□□□ 0.04
TRIM28-213ENST00000598355 PCDHGA9Q9Y5G4 932 aaKnown RBP15.33■□□□□ 0.04
TRIM28-213ENST00000598355 NCF1BA6NI72 391 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-213ENST00000598355 ARGFXA6NJG6 315 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 NCF1CA8MVU1 366 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-213ENST00000598355 H0YIG0 161 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 ZNF500O60304 480 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-213ENST00000598355 PRAMEF4O60810 478 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 DNAJB5O75953 348 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 WDR47O94967 919 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 INHBAP08476 426 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 FAM153BP0C7A2 387 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 SLC35G6P0C7Q6 338 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 NCF1P14598 390 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-213ENST00000598355 GNAZP19086 355 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 EPORP19235 508 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 TNFRSF8P28908 595 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 GDF5P43026 501 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 SERPINB9P50453 376 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 C19orf57Q0VDD7 668 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 CDC16Q13042 620 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms