RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SCTRP47872 440 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 DUSP3P51452 185 aaPredicted RBP14.05□□□□□ -0.16
VRK3-212ENST00000596814 GFERP55789 205 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 AMZ1Q400G9 498 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 GALNTL6Q49A17 601 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 DBX2Q6ZNG2 339 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 ANKRD53Q8N9V6 530 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 TTLQ8NG68 377 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 BAHD1Q8TBE0 780 aaPredicted RBP14.05□□□□□ -0.16
VRK3-212ENST00000596814 ZUFSPQ96AP4 578 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 ZDHHC12Q96GR4 267 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 PPP3R2Q96LZ3 170 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 TGM7Q96PF1 710 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 CD180Q99467 661 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 SARGQ9BW04 601 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 KCNH6Q9H252 994 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 TMEM9BQ9NQ34 198 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 COL5A1P20908 1838 aaPredicted RBP14.05□□□□□ -0.16
VRK3-212ENST00000596814 OTOGLQ3ZCN5 2332 aa14.05□□□□□ -0.16
VRK3-212ENST00000596814 FRYLO94915 3013 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 TLCD2A6NGC4 264 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 CDX4O14627 284 aaPredicted RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 CCDC22O60826 627 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 PEX11AO75192 247 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 RSL1D1O76021 490 aaKnown RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 SERPINA6P08185 405 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 HOXB3P14651 431 aaPredicted RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 LBPP18428 481 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 GSTM2P28161 218 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 BCL6P41182 706 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 RPS15AP62244 130 aaKnown RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 RPS13P62277 151 aaKnown RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 CYP4F2P78329 520 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 CYP4F3Q08477 520 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 CSRP2Q16527 193 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 PERM1Q5SV97 790 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 METTL21CQ5VZV1 264 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 TMEM198Q66K66 360 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 FCRL6Q6DN72 434 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 PRR23CQ6ZRP0 262 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 FAM92BQ6ZTR7 304 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 VN1R5Q7Z5H4 357 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 MTDHQ86UE4 582 aaKnown RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 PLXDC1Q8IUK5 500 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 LRRC37BQ96QE4 947 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 MAP3K3Q99759 626 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 NMUR2Q9GZQ4 415 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 KLHL25Q9H0H3 589 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 LRTM1Q9HBL6 345 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 C1GALT1Q9NS00 363 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 PPT2Q9UMR5 302 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 SLC12A4Q9UP95 1085 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 FCHO1O14526 889 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 LCMT2O60294 686 aaKnown RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 ST6GAL1P15907 406 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 NCF2P19878 526 aaPredicted RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 PRPH2P23942 346 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 CD1CP29017 333 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 CSF2RBP32927 897 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 AHRP35869 848 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 SLC14A1Q13336 389 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 AP5B1Q2VPB7 878 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 SPDYAQ5MJ70 313 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 C6orf136Q5SQH8 315 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 OGFOD2Q6N063 350 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 C19orf47Q8N9M1 422 aaKnown RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 FNDC5Q8NAU1 212 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 MFSD9Q8NBP5 474 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 IFI44Q8TCB0 444 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 CNDP2Q96KP4 475 aaKnown RBP14.04□□□□□ -0.16
VRK3-212ENST00000596814 MARK4Q96L34 752 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 CATSPER2Q96P56 530 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 CCDC3Q9BQI4 270 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 RXFP3Q9NSD7 469 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 VPS29Q9UBQ0 182 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 ZFP69BQ9UJL9 534 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 PCDHGA4Q9Y5G9 962 aa14.04□□□□□ -0.16
VRK3-212ENST00000596814 MN1Q10571 1320 aaPredicted RBP14.03□□□□□ -0.16
VRK3-212ENST00000596814 NPIPB8E9PQR5 432 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 UBDO15205 165 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 SLC34A2O95436 690 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 ETHE1O95571 254 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 ERVK-8P63133 956 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 RPL38P63173 70 aaKnown RBP14.03□□□□□ -0.16
VRK3-212ENST00000596814 RELAQ04206 551 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 RNF44Q7L0R7 432 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 ZFAND4Q86XD8 727 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 RHBDD1Q8TEB9 315 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 CMTM7Q96FZ5 175 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 TRAPPC9Q96Q05 1148 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 SERPINI1Q99574 410 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 ZFYVE21Q9BQ24 234 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 MS4A8Q9BY19 250 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 PARD6AQ9NPB6 346 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 NMRK1Q9NWW6 199 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 C1orf109Q9NX04 203 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 G3BP2Q9UN86 482 aaKnown RBP14.03□□□□□ -0.16
VRK3-212ENST00000596814 UNC13CQ8NB66 2214 aa14.03□□□□□ -0.16
VRK3-212ENST00000596814 ASCC3Q8N3C0 2202 aaKnown RBP14.02□□□□□ -0.16
VRK3-212ENST00000596814 SLC9B1P1A6NJY1 282 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms