RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ZNF160Q9HCG1 818 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 MKKSQ9NPJ1 570 aaPredicted RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 ARL15Q9NXU5 204 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 GRHL1Q9NZI5 618 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 RNF14Q9UBS8 474 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 CDC14AQ9UNH5 594 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 NTNG1Q9Y2I2 539 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 VWA7Q9Y334 891 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 IGHV1-45A0A0A0MS14 117 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 NPEPPSL1A6NEC2 478 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 TCP11X1B4DZS4 312 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 TXNDC9O14530 226 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 VPS4BO75351 444 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 WISP3O95389 354 aaPredicted RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 NSA2O95478 260 aaKnown RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 GUCA1CO95843 209 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 C1QAP02745 245 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 CELA2AP08217 269 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 ANXA5P08758 320 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 NPPBP16860 134 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 CCND1P24385 295 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 HRH2P25021 359 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 AP1S2P56377 157 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 TAS2R39P59534 338 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 MEF2AQ02078 507 aaPredicted RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 MRPL49Q13405 166 aaKnown RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 CAPN13Q6MZZ7 669 aaPredicted RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 STRA8Q7Z7C7 330 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 SLC26A11Q86WA9 606 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 PDSS2Q86YH6 399 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 CEP97Q8IW35 865 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 PALM2Q8IXS6 379 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 IQCKQ8N0W5 287 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 FAM26EQ8N5C1 309 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 KCT2Q8NC54 265 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 PPP4R1Q8TF05 950 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 ANKRD49Q8WVL7 239 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 FBXL8Q96CD0 374 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 PDLIM5Q96HC4 596 aaKnown RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 THOC3Q96J01 351 aaKnown RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 WDR77Q9BQA1 342 aaPredicted RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 LHPPQ9H008 270 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 VPS4AQ9UN37 437 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 NOVA2Q9UNW9 492 aaKnown RBP12.37□□□□□ -0.43
LIG1-212ENST00000596549 PCDHGA10Q9Y5H3 936 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 HECTD1Q9ULT8 2610 aa12.37□□□□□ -0.43
LIG1-212ENST00000596549 LOC102723996A0A087X1L8 192 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 CTAGE15A4D2H0 777 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 CXorf49A8MYA2 514 aaPredicted RBP12.36□□□□□ -0.43
LIG1-212ENST00000596549 H0YIG0 161 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 CDC7O00311 574 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 KLHL18O94889 574 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 ENO2P09104 434 aaPredicted RBP12.36□□□□□ -0.43
LIG1-212ENST00000596549 HIST1H2AGP0C0S8 130 aaPredicted RBP12.36□□□□□ -0.43
LIG1-212ENST00000596549 RNF224P0DH78 156 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 HIST1H2ADP20671 130 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 SAT1P21673 171 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 SSTR1P30872 391 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 EMP2P54851 167 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 PCOLCEQ15113 449 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 NDUFA9Q16795 377 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 CATSPEREQ5SY80 951 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 DUPD1Q68J44 220 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 FAAH2Q6GMR7 532 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 TMEM205Q6UW68 189 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 ASPGQ86U10 573 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 CTAGE6Q86UF2 777 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 ZNF740Q8NDX6 193 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 ABHD11Q8NFV4 315 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 PSMF1Q92530 271 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 TM9SF4Q92544 642 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 NEIL2Q969S2 332 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 THAP11Q96EK4 314 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 MOCOSQ96EN8 888 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 VPS39Q96JC1 886 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 HIST1H2AHQ96KK5 128 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 HIST1H2AJQ99878 128 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 ERP44Q9BS26 406 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 H2AFJQ9BTM1 129 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 SARGQ9BW04 601 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 YIPF2Q9BWQ6 316 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 ILKAPQ9H0C8 392 aaPredicted RBP12.36□□□□□ -0.43
LIG1-212ENST00000596549 RHOJQ9H4E5 214 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 ASF1BQ9NVP2 202 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 HCN3Q9P1Z3 774 aa12.36□□□□□ -0.43
LIG1-212ENST00000596549 NSG1A0A0A6YYJ2 146 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 FAM187AA6NFU0 413 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 SGK494L7N484 410 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 KLHL41O60662 606 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 RDH16O75452 317 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 BMP10O95393 424 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 SOX11P35716 441 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 AVPR1BP47901 424 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 AGAP7PQ5VUJ5 663 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 LANCL3Q6ZV70 420 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 ZADH2Q8N4Q0 377 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 CISD2Q8N5K1 135 aaKnown RBP12.35□□□□□ -0.43
LIG1-212ENST00000596549 MFSD9Q8NBP5 474 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 OR4K1Q8NGD4 311 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 BRIX1Q8TDN6 353 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms