RNA–Protein interactions for RNA: ENST00000592535.5

APOC1-208, Transcript of apolipoprotein C1, humanhuman

TSL 1 (best)

Gene APOC1, Length 430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOC1-208ENST00000592535 SHISA5Q8N114 240 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 OR9A4Q8NGU2 314 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 ZCCHC10Q8TBK6 192 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 PYROXD1Q8WU10 500 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 ANKRD49Q8WVL7 239 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 TM4SF19Q96DZ7 209 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 THAP11Q96EK4 314 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 VPS39Q96JC1 886 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 VPS50Q96JG6 964 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 OR4K3Q96R72 315 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 HAUS8Q9BT25 410 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 MCMBPQ9BTE3 642 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 RHOJQ9H4E5 214 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 MKKSQ9NPJ1 570 aaPredicted RBP13.17□□□□□ -0.3
APOC1-208ENST00000592535 C14orf105Q9NVL8 296 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 NSMCE4AQ9NXX6 385 aa13.17□□□□□ -0.3
APOC1-208ENST00000592535 CXorf49A8MYA2 514 aaPredicted RBP13.16□□□□□ -0.3
APOC1-208ENST00000592535 EIF3HO15372 352 aaKnown RBP eCLIP13.16□□□□□ -0.3
APOC1-208ENST00000592535 HPP00738 406 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 IL1RNP18510 177 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 AVPR1BP47901 424 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 UQCRFS1P47985 274 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 EFNA3P52797 238 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 EEF1A2Q05639 463 aaKnown RBP13.16□□□□□ -0.3
APOC1-208ENST00000592535 PLEKHN1Q494U1 663 aaPredicted RBP13.16□□□□□ -0.3
APOC1-208ENST00000592535 CATSPEREQ5SY80 951 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 ATG9BQ674R7 924 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 FAAH2Q6GMR7 532 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 TMEM214Q6NUQ4 689 aaKnown RBP13.16□□□□□ -0.3
APOC1-208ENST00000592535 ASPGQ86U10 573 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 NKAPQ8N5F7 415 aaKnown RBP13.16□□□□□ -0.3
APOC1-208ENST00000592535 MFSD9Q8NBP5 474 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 KCT2Q8NC54 265 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 CAMKVQ8NCB2 501 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 ABHD11Q8NFV4 315 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 ATL1Q8WXF7 558 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 THOC3Q96J01 351 aaKnown RBP13.16□□□□□ -0.3
APOC1-208ENST00000592535 TGIF2Q9GZN2 237 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 SPNS1Q9H2V7 528 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 ZNF160Q9HCG1 818 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 NOVA2Q9UNW9 492 aaKnown RBP13.16□□□□□ -0.3
APOC1-208ENST00000592535 B3GNT3Q9Y2A9 372 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 MTO1Q9Y2Z2 717 aaKnown RBP13.16□□□□□ -0.3
APOC1-208ENST00000592535 CSAG2Q9Y5P2 127 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 SCN2AQ99250 2005 aa13.16□□□□□ -0.3
APOC1-208ENST00000592535 DOPEY2Q9Y3R5 2298 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 H0YIG0 161 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 VPS4BO75351 444 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 NSA2O95478 260 aaKnown RBP13.15□□□□□ -0.3
APOC1-208ENST00000592535 HEXBP07686 556 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 COX6A1P12074 109 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 GNLYP22749 145 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 GRK3P35626 688 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 CCR8P51685 355 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 PLTPP55058 493 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 SRSF1Q07955 248 aaKnown RBP eCLIP13.15□□□□□ -0.3
APOC1-208ENST00000592535 TRADDQ15628 312 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 AGAP7PQ5VUJ5 663 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 IRAK1BP1Q5VVH5 260 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 ZADH2Q8N4Q0 377 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 GALNT11Q8NCW6 608 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 OR4K1Q8NGD4 311 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 SLC13A3Q8WWT9 602 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 TM9SF4Q92544 642 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 NEIL2Q969S2 332 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 TSNARE1Q96NA8 513 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 AGAP4Q96P64 663 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 UNKQ9C0B0 810 aaKnown RBP13.15□□□□□ -0.3
APOC1-208ENST00000592535 LHPPQ9H008 270 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 CAB39LQ9H9S4 337 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 GPAMQ9HCL2 828 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 HCN3Q9P1Z3 774 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 VPS4AQ9UN37 437 aa13.15□□□□□ -0.3
APOC1-208ENST00000592535 UTP11Q9Y3A2 253 aaKnown RBP13.15□□□□□ -0.3
APOC1-208ENST00000592535 ASH1LQ9NR48 2969 aaKnown RBP13.14□□□□□ -0.31
APOC1-208ENST00000592535 IGHV1-45A0A0A0MS14 117 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 NSG1A0A0A6YYJ2 146 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 TCRBV9S1A1TA0A576 114 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 TRBC2A0A5B9 178 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 CLEC18AA5D8T8 446 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 SGK494L7N484 410 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 OR1F1O43749 312 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 JRKO75564 520 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 WISP3O95389 354 aaPredicted RBP13.14□□□□□ -0.31
APOC1-208ENST00000592535 BMP10O95393 424 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 C1QAP02745 245 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 CXCR2P25025 360 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 GPX6P59796 221 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 UBAP2LQ14157 1087 aaKnown RBP13.14□□□□□ -0.31
APOC1-208ENST00000592535 TSNQ15631 228 aaKnown RBP13.14□□□□□ -0.31
APOC1-208ENST00000592535 ZDHHC24Q6UX98 284 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 CLEC18BQ6UXF7 455 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 Q6ZS92 163 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 NDUFAF7Q7L592 441 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 ZNF572Q7Z3I7 529 aaPredicted RBP13.14□□□□□ -0.31
APOC1-208ENST00000592535 THOC6Q86W42 341 aaKnown RBP13.14□□□□□ -0.31
APOC1-208ENST00000592535 PDSS2Q86YH6 399 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 IQCKQ8N0W5 287 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 CLEC18CQ8NCF0 446 aa13.14□□□□□ -0.31
APOC1-208ENST00000592535 ZNF740Q8NDX6 193 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms