RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FOXS1O43638 330 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 TLE1Q04724 770 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 KLC1Q07866 573 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 RAPSNQ13702 412 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 FAM53BQ14153 422 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 VWA2Q5GFL6 755 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 NOA1Q8NC60 698 aaKnown RBP22.71■■□□□ 1.23
SHMT1-206ENST00000579558 CAMKVQ8NCB2 501 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 MACROD1Q9BQ69 325 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 FBXL4Q9UKA2 621 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 MRPS2Q9Y399 296 aaKnown RBP22.71■■□□□ 1.23
SHMT1-206ENST00000579558 DYRK1BQ9Y463 629 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 PCDHGB7Q9Y5F8 929 aa22.71■■□□□ 1.23
SHMT1-206ENST00000579558 IGLV3-12A0A075B6K2 115 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 CTAGE15A4D2H0 777 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 MASP2O00187 686 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 SOCS6O14544 535 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 LCMT2O60294 686 aaKnown RBP22.7■■□□□ 1.22
SHMT1-206ENST00000579558 FAM155BO75949 473 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 CTAGE8P0CG41 777 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 CCDC166P0CW27 439 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 SLC26A3P40879 764 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 AVPR1BP47901 424 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 MEF2AQ02078 507 aaPredicted RBP22.7■■□□□ 1.22
SHMT1-206ENST00000579558 NAB1Q13506 487 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 CSHL1Q14406 222 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 EFTUD2Q15029 972 aaKnown RBP eCLIP22.7■■□□□ 1.22
SHMT1-206ENST00000579558 ASPGQ86U10 573 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 CTAGE6Q86UF2 777 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 THOC6Q86W42 341 aaKnown RBP22.7■■□□□ 1.22
SHMT1-206ENST00000579558 CTAGE4Q8IX94 777 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 SPATA6LQ8N4H0 392 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 AMER3Q8N944 861 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 MFSD9Q8NBP5 474 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 OR4K1Q8NGD4 311 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 SLC5A11Q8WWX8 675 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 NEIL2Q969S2 332 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 TSNARE1Q96NA8 513 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 FAM129AQ9BZQ8 928 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 ATP13A2Q9NQ11 1180 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 C3orf18Q9UK00 162 aa22.7■■□□□ 1.22
SHMT1-206ENST00000579558 HNMTP50135 292 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 RAB10P61026 200 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 SNRPNP63162 240 aaKnown RBP22.69■■□□□ 1.22
SHMT1-206ENST00000579558 SLMAPQ14BN4 828 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 ZKSCAN8Q15776 578 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-206ENST00000579558 CATSPEREQ5SY80 951 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 KIRREL2Q6UWL6 708 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 GALNT16Q8N428 558 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 TBC1D19Q8N5T2 526 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 SLC13A3Q8WWT9 602 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 TRIM44Q96DX7 344 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-206ENST00000579558 TM4SF19Q96DZ7 209 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 VPS50Q96JG6 964 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 MKKSQ9NPJ1 570 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-206ENST00000579558 C14orf105Q9NVL8 296 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 MTRF1LQ9UGC7 380 aaKnown RBP22.69■■□□□ 1.22
SHMT1-206ENST00000579558 DMGDHQ9UI17 866 aaKnown RBP22.69■■□□□ 1.22
SHMT1-206ENST00000579558 SLC22A14Q9Y267 594 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 MAP4K5Q9Y4K4 846 aa22.69■■□□□ 1.22
SHMT1-206ENST00000579558 TENM4Q6N022 2769 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 TRBC2A0A5B9 178 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 OR1F1O43749 312 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 SLC35G6P0C7Q6 338 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 SYT16Q17RD7 645 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 TUBB8Q3ZCM7 444 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 VWA5B1Q5TIE3 1220 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 TMEM214Q6NUQ4 689 aaKnown RBP22.68■■□□□ 1.22
SHMT1-206ENST00000579558 OR9A4Q8NGU2 314 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 KIF18AQ8NI77 898 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 ZCCHC10Q8TBK6 192 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 SMAD5Q99717 465 aaKnown RBP22.68■■□□□ 1.22
SHMT1-206ENST00000579558 SARGQ9BW04 601 aa22.68■■□□□ 1.22
SHMT1-206ENST00000579558 NCF1BA6NI72 391 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-206ENST00000579558 NCF1CA8MVU1 366 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-206ENST00000579558 ALOX12BO75342 701 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 NSA2O95478 260 aaKnown RBP22.67■■□□□ 1.22
SHMT1-206ENST00000579558 NCF1P14598 390 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-206ENST00000579558 CD1DP15813 335 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 IL1RNP18510 177 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 ATP6V0D1P61421 351 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 MAT1AQ00266 395 aaKnown RBP22.67■■□□□ 1.22
SHMT1-206ENST00000579558 AIMP2Q13155 320 aaKnown RBP22.67■■□□□ 1.22
SHMT1-206ENST00000579558 MYBPC3Q14896 1274 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 TGFBIQ15582 683 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 CEP128Q6ZU80 1094 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 RAPH1Q70E73 1250 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 PRSS41Q7RTY9 318 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 TMPRSS11BQ86T26 416 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 LAPTM4BQ86VI4 370 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 KCT2Q8NC54 265 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 RHBDF1Q96CC6 855 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 SPNS1Q9H2V7 528 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 PELI2Q9HAT8 420 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 KCNE2Q9Y6J6 123 aa22.67■■□□□ 1.22
SHMT1-206ENST00000579558 ASH1LQ9NR48 2969 aaKnown RBP22.66■■□□□ 1.22
SHMT1-206ENST00000579558 IDSB3KWA1 339 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 H0YIG0 161 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 MAP2K7O14733 419 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 KLHL41O60662 606 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms