RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SHISA5Q8N114 240 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 MOCOSQ96EN8 888 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 HOMER3Q9NSC5 361 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 DHRS7Q9Y394 339 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 SCN2AQ99250 2005 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 IGHV3-20A0A0C4DH32 117 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 MAGEB16A2A368 324 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 KIF5CO60282 957 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 SEC24DO94855 1032 aaPredicted RBP19.91■□□□□ 0.78
VPS53-216ENST00000574029 STATHP02808 62 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 HRH2P25021 359 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 RPS15AP62244 130 aaKnown RBP19.91■□□□□ 0.78
VPS53-216ENST00000574029 CTBP1Q13363 440 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 ANKRD22Q5VYY1 191 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 MTFR2Q6P444 385 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 LANCL3Q6ZV70 420 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 PRSS41Q7RTY9 318 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 MRGPRGQ86SM5 289 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 ZNF808Q8N4W9 903 aaPredicted RBP19.91■□□□□ 0.78
VPS53-216ENST00000574029 OR51Q1Q8NH59 317 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 ZNF669Q96BR6 464 aaPredicted RBP19.91■□□□□ 0.78
VPS53-216ENST00000574029 FBXO6Q9NRD1 293 aaPredicted RBP19.91■□□□□ 0.78
VPS53-216ENST00000574029 SAMD15Q9P1V8 674 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 C19orf25Q9UFG5 118 aaPredicted RBP19.91■□□□□ 0.78
VPS53-216ENST00000574029 PCDHGB6Q9Y5F9 930 aa19.91■□□□□ 0.78
VPS53-216ENST00000574029 ZCWPW2A0A1B0GU75 182 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 A8MUI8 341 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 CCDC175P0C221 793 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 MLNP12872 115 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 RBPJQ06330 500 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 GPS1Q13098 491 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 THOC5Q13769 683 aaKnown RBP19.9■□□□□ 0.78
VPS53-216ENST00000574029 PTK6Q13882 451 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 BTBD16Q32M84 506 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 MINDY4Q4G0A6 757 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 ZNF766Q5HY98 468 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 TMEM214Q6NUQ4 689 aaKnown RBP19.9■□□□□ 0.78
VPS53-216ENST00000574029 RPTNQ6XPR3 784 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 BNC2Q6ZN30 1099 aaPredicted RBP19.9■□□□□ 0.78
VPS53-216ENST00000574029 PCGF5Q86SE9 256 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 CD200R1Q8TD46 325 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 MCOLN3Q8TDD5 553 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 THAP11Q96EK4 314 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 ZNF354BQ96LW1 612 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 GPR21Q99679 349 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 CCDC68Q9H2F9 335 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 CCDC177Q9NQR7 707 aaPredicted RBP19.9■□□□□ 0.78
VPS53-216ENST00000574029 COMMD10Q9Y6G5 202 aa19.9■□□□□ 0.78
VPS53-216ENST00000574029 SDR42E2A6NKP2 422 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 EIF3FO00303 357 aaPredicted RBP19.89■□□□□ 0.77
VPS53-216ENST00000574029 CEP104O60308 925 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 BCL6P41182 706 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 XCR1P46094 333 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 VPS41P49754 854 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 PMP22Q01453 160 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 ZNF630Q2M218 657 aaPredicted RBP19.89■□□□□ 0.77
VPS53-216ENST00000574029 ACER2Q5QJU3 275 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 MFSD4BQ5TF39 518 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 UBE2R2Q712K3 238 aaPredicted RBP19.89■□□□□ 0.77
VPS53-216ENST00000574029 PIWIL4Q7Z3Z4 852 aaKnown RBP19.89■□□□□ 0.77
VPS53-216ENST00000574029 ANKRD37Q7Z713 158 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 CPNE9Q8IYJ1 553 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 BEST3Q8N1M1 668 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 TM4SF19Q96DZ7 209 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 PDLIM2Q96JY6 352 aa19.89■□□□□ 0.77
VPS53-216ENST00000574029 WISP2O76076 250 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 IL1RNP18510 177 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 PTGER4P35408 488 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 SLC1A2P43004 574 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 AGTR2P50052 363 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 TBPL1P62380 186 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 CSNK1G2P78368 415 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 LMNTD2Q8IXW0 634 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 MDS2Q8NDY4 140 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 MCUQ8NE86 351 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 ANP32BQ92688 251 aaKnown RBP19.88■□□□□ 0.77
VPS53-216ENST00000574029 MACROD1Q9BQ69 325 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 PCBD2Q9H0N5 130 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 CHST11Q9NPF2 352 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 LZTFL1Q9NQ48 299 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 HCN3Q9P1Z3 774 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 CSMD1Q96PZ7 3565 aa19.88■□□□□ 0.77
VPS53-216ENST00000574029 OR2W5A6NFC9 320 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 SGK494L7N484 410 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 SLC19A2O60779 497 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 KRT14P02533 472 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 POU3F2P20265 443 aaPredicted RBP19.87■□□□□ 0.77
VPS53-216ENST00000574029 HTR1EP28566 365 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 TUBA3CQ13748 450 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 FCRLBQ6BAA4 426 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 TUBA3EQ6PEY2 450 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 CRLF3Q8IUI8 442 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 CAMKVQ8NCB2 501 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 M1APQ8TC57 530 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 CCDC138Q96M89 665 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 SERPINB12Q96P63 405 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 SIGLEC12Q96PQ1 595 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 NPAS2Q99743 824 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 KCNK13Q9HB14 408 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 XAB2Q9HCS7 855 aaKnown RBP19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms