RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245		E7ENX8	843 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	PLIN3	O60664	434 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	SRPX2	O60687	465 aa	Predicted RBP	13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	C8G	P07360	202 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	CD63	P08962	238 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	RBP1	P09455	135 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	DHRS4L1	P0CG22	281 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	ERG	P11308	486 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	CHN1	P15882	459 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	HIST1H2AD	P20671	130 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	OTX2	P32243	289 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	WDR4	P57081	412 aa	Known RBP	13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	YBX1	P67809	324 aa	Known RBP	13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	TAP2	Q03519	686 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	FAM214A	Q32MH5	1076 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	WASHC2D	Q5SRD0	308 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	ICE2	Q659A1	982 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZNF385C	Q66K41	422 aa	Predicted RBP	13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	KLC3	Q6P597	504 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	ADCK2	Q7Z695	626 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	ISCA2	Q86U28	154 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	TMEM151A	Q8N4L1	468 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	ANKRD42	Q8N9B4	389 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	RHEBL1	Q8TAI7	183 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	HIST1H2AH	Q96KK5	128 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	FAM111A	Q96PZ2	611 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	HIST1H2AJ	Q99878	128 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	MRPL57	Q9BQC6	102 aa	Known RBP	13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	H2AFJ	Q9BTM1	129 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	PARVB	Q9HBI1	364 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	SLC6A20	Q9NP91	592 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	CUTC	Q9NTM9	273 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	ADAMTS6	Q9UKP5	1117 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	PTRH2	Q9Y3E5	179 aa	Known RBP	13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	KLK4	Q9Y5K2	254 aa		13.84	□□□□□ -0.19
COMMD4-225	ENST00000569245	LOC105369274	A0A096LPK9	316 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	LOC102723532	A0A0G2JNH3	316 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245		A0A1B0GX78	115 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	HYKK	A2RU49	373 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	PROC	P04070	461 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	PIM1	P11309	404 aa	Predicted RBP	13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	PLA2G2A	P14555	144 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	FOLR3	P41439	243 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	PRDX1	Q06830	199 aa	Known RBP	13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	CHAF1B	Q13112	559 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	LACTB2	Q53H82	288 aa	Predicted RBP	13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	TECRL	Q5HYJ1	363 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	YOD1	Q5VVQ6	348 aa	Predicted RBP	13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	FRMPD2B	Q6IN97	320 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	FBXO42	Q6P3S6	717 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	RAB43	Q86YS6	212 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	OR4N4	Q8N0Y3	316 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	SPATA6L	Q8N4H0	392 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	METTL27	Q8N6F8	245 aa	Predicted RBP	13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	KIAA1191	Q96A73	305 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	CCDC138	Q96M89	665 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	ZFYVE21	Q9BQ24	234 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	PLCD4	Q9BRC7	762 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	ING2	Q9H160	280 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	MRPL46	Q9H2W6	279 aa	Known RBP	13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	C12orf65	Q9H3J6	166 aa	Known RBP	13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	ACSS2	Q9NR19	701 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	MID2	Q9UJV3	735 aa		13.83	□□□□□ -0.2
COMMD4-225	ENST00000569245	SPTA1	P02549	2419 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	OR2A25	A4D2G3	310 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	DSCR3	O14972	297 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	SLC16A5	O15375	505 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	NRP2	O60462	931 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	DNAJB5	O75953	348 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	TFEB	P19484	476 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	IMPA1	P29218	277 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	GLRB	P48167	497 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	CCL11	P51671	97 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	ABAT	P80404	500 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	SP140	Q13342	867 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	HHAT	Q5VTY9	493 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	CPZ	Q66K79	652 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	RNF44	Q7L0R7	432 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	APLF	Q8IW19	511 aa	Predicted RBP	13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	ARMC2	Q8NEN0	867 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	STAG3L4	Q8TBR4	150 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	RDH11	Q8TC12	318 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	RERG	Q96A58	199 aa	Predicted RBP	13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	PTER	Q96BW5	349 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	SCYL1	Q96KG9	808 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	TRIM54	Q9BYV2	358 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	CCDC177	Q9NQR7	707 aa	Predicted RBP	13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	INTS9	Q9NV88	658 aa	Known RBP	13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	STOX2	Q9P2F5	926 aa	Predicted RBP	13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	ANKMY1	Q9P2S6	941 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	XPR1	Q9UBH6	696 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	PDE10A	Q9Y233	779 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	SPTB	P11277	2137 aa		13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	TLN1	Q9Y490	2541 aa	Known RBP	13.82	□□□□□ -0.2
COMMD4-225	ENST00000569245	GCN1	Q92616	2671 aa	Known RBP	13.81	□□□□□ -0.2
COMMD4-225	ENST00000569245	IGKV1-8	A0A0C4DH67	115 aa		13.81	□□□□□ -0.2
COMMD4-225	ENST00000569245		H0YGG7	62 aa		13.81	□□□□□ -0.2
COMMD4-225	ENST00000569245		H7BY64	318 aa		13.81	□□□□□ -0.2
COMMD4-225	ENST00000569245		J3QKU1	62 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms