RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 C10orf82Q8WW14 230 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PYDC1Q8WXC3 89 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 S100ZQ8WXG8 99 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ASB12Q8WXK4 309 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ROBO4Q8WZ75 1007 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ST8SIA4Q92187 359 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CPT1BQ92523 772 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PROX1Q92786 737 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CD101Q93033 1021 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 EXOSC8Q96B26 276 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 RNF170Q96K19 258 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 MAGEB18Q96M61 343 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 DACH2Q96NX9 599 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 NT5C1BQ96P26 610 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 BBC3Q96PG8 261 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 FCRL4Q96PJ5 515 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 LENG8Q96PV6 779 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 FAM111AQ96PZ2 611 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CCNL2Q96S94 520 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 CYTH2Q99418 400 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 P2RX7Q99572 595 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 PELOQ9BRX2 385 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 DCUN1D5Q9BTE7 237 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.16□□□□□ -1.9
VPS35-208ENST00000568612 SF3B5Q9BWJ5 86 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 STRA6Q9BX79 667 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TM6SF1Q9BZW5 370 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 AMBRA1Q9C0C7 1298 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 C2orf40Q9H1Z8 148 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 MMP27Q9H306 513 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 FOXP1Q9H334 677 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 OR51B6Q9H340 312 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PRDM13Q9H4Q3 707 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 JMJD4Q9H9V9 463 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZDHHC4Q9NPG8 344 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ANLNQ9NQW6 1124 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 SERINC1Q9NRX5 453 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 NRBP2Q9NSY0 501 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ABHD10Q9NUJ1 306 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 TMOD3Q9NYL9 352 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CD274Q9NZQ7 290 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CCDC59Q9P031 241 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 VPS54Q9P1Q0 977 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 COPG2Q9UBF2 871 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 SERTAD3Q9UJW9 196 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 VPS28Q9UK41 221 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 GUCA1BQ9UMX6 200 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CDC14AQ9UNH5 594 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PLCL2Q9UPR0 1127 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.16□□□□□ -1.9
VPS35-208ENST00000568612 CRYL1Q9Y2S2 319 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 DHRS7Q9Y394 339 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PLEKHM1Q9Y4G2 1056 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 SRPRBQ9Y5M8 271 aaKnown RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 HEMK1Q9Y5R4 338 aaPredicted RBP3.16□□□□□ -1.9
VPS35-208ENST00000568612 ZNF609O15014 1411 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 PFASO15067 1338 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 SF3B1O75533 1304 aaKnown RBP eCLIP3.16□□□□□ -1.9
VPS35-208ENST00000568612 ABCB11O95342 1321 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 ADGRA2Q96PE1 1338 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 CNTNAP2Q9UHC6 1331 aa3.16□□□□□ -1.9
VPS35-208ENST00000568612 KIAA0556O60303 1618 aa3.15□□□□□ -1.9
VPS35-208ENST00000568612 NEXMIFQ5QGS0 1516 aa3.15□□□□□ -1.9
VPS35-208ENST00000568612 CLTCQ00610 1675 aaKnown RBP3.15□□□□□ -1.9
VPS35-208ENST00000568612 ECM29Q5VYK3 1845 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 A0A1B0GV90 55 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 BCLAF3A2AJT9 711 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 KRT87PA6NCN2 255 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SLC15A5A6NIM6 579 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 OR6C75A6NL08 312 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 EFCAB7A8K855 629 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CENPXA8MT69 81 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 VWC2LB2RUY7 222 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GPR89AB7ZAQ6 455 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 H3BML4 177 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 I3L521 148 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 EYA2O00167 538 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PDHXO00330 501 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ATP2A1O14983 1001 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SCAMP1O15126 338 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RGS16O15492 202 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 RRP8O43159 456 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 IRAK2O43187 625 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 VEGFDO43915 354 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 JAK2O60674 1132 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CST8O60676 142 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SEC22BO75396 215 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RFPL1O75677 317 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TMEM63AO94886 807 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 MFN2O95140 757 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CBX6O95503 412 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 NDST3O95803 873 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 IFNA2P01563 188 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GYPCP04921 128 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RBP1P09455 135 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ATXN1LP0C7T5 689 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 GPR89BP0CG08 455 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SRGAP2BP0DMP2 458 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RALAP11233 206 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ACADMP11310 421 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms