RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 AUP1Q9Y679 476 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 STYXL1Q9Y6J8 313 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 TRAV24A0A0B4J272 114 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 SRRM5B3KS81 715 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 C2CD4DB7Z1M9 353 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 HAT1O14929 419 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 CYTIPO60759 359 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 PSMD10O75832 226 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 EPCAMP16422 314 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 CD27P26842 260 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 ETV5P41161 510 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 SRPXP78539 464 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 IFI35P80217 286 aaPredicted RBP2.25□□□□□ -2.05
VPS35-207ENST00000568191 ILF2Q12905 390 aaKnown RBP2.25□□□□□ -2.05
VPS35-207ENST00000568191 SRSF9Q13242 221 aaKnown RBP eCLIP2.25□□□□□ -2.05
VPS35-207ENST00000568191 IL11RAQ14626 422 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 NPTX1Q15818 432 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 ATP1A1-AS1Q5TC04 95 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 AGAP7PQ5VUJ5 663 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 MZT2BQ6NZ67 158 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 PRSS55Q6UWB4 352 aaPredicted RBP2.25□□□□□ -2.05
VPS35-207ENST00000568191 ENOSF1Q7L5Y1 443 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 TIPARPQ7Z3E1 657 aaKnown RBP2.25□□□□□ -2.05
VPS35-207ENST00000568191 GBP7Q8N8V2 638 aaPredicted RBP2.25□□□□□ -2.05
VPS35-207ENST00000568191 OR4C15Q8NGM1 316 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 PROX1Q92786 737 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 RFT1Q96AA3 541 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 CCDC68Q9H2F9 335 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 ADNPQ9H2P0 1102 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 Q9H8V8 135 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 PRMT7Q9NVM4 692 aaPredicted RBP2.25□□□□□ -2.05
VPS35-207ENST00000568191 TBC1D7Q9P0N9 293 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 B4GALT7Q9UBV7 327 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 IL36AQ9UHA7 158 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 GTF3C4Q9UKN8 822 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 ARID2Q68CP9 1835 aa2.25□□□□□ -2.05
VPS35-207ENST00000568191 MYH14Q7Z406 1995 aaKnown RBP2.24□□□□□ -2.05
VPS35-207ENST00000568191 A0A087WWV3 80 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 EDDM13A0A1B0GTR0 161 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 hCG_1809904A0A1W2PP81 198 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 A0A1W2PPE2 198 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 A0A1W2PR64 198 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 TCRBV21S2A2A0A5A6 115 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 ZNF840PA6NDX5 716 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 CASTOR2A6NHX0 329 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 CCL24O00175 119 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 CLDN4O14493 209 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 NXPH4O95158 308 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 ADORA3P0DMS8 318 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 GPR183P32249 361 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 HSD17B3P37058 310 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 NDST2P52849 883 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 LYZP61626 148 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 NONOQ15233 471 aaKnown RBP eCLIP2.24□□□□□ -2.05
VPS35-207ENST00000568191 ALDH1L2Q3SY69 923 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 RNF212Q495C1 297 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 WDR78Q5VTH9 848 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 RNLSQ5VYX0 342 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 KRT39Q6A163 491 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 CFAP161Q6P656 301 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 MACC1Q6ZN28 852 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 ZBTB49Q6ZSB9 765 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 PLPPR4Q7Z2D5 763 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 C4orf32Q8N8J7 132 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 AVL9Q8NBF6 648 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 CSNK1G2-AS1Q8NCQ2 148 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 TYMSOSQ8TAI1 123 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 AGAP11Q8TF27 550 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 TEKT4Q8WW24 435 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 ZNF830Q96NB3 372 aaPredicted RBP2.24□□□□□ -2.05
VPS35-207ENST00000568191 FEVQ99581 238 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 IL12RB2Q99665 862 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 HNRNPABQ99729 332 aaKnown RBP2.24□□□□□ -2.05
VPS35-207ENST00000568191 EGLN3Q9H6Z9 239 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 SP140LQ9H930 580 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 CHORDC1Q9UHD1 332 aaPredicted RBP2.24□□□□□ -2.05
VPS35-207ENST00000568191 SLC12A6Q9UHW9 1150 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 ABCA7Q8IZY2 2146 aa2.24□□□□□ -2.05
VPS35-207ENST00000568191 PRRC2AP48634 2157 aaKnown RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 hCG_38984A0A1B0GV85 526 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 NKX6-3A6NJ46 265 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 TCP10L2B9ZVM9 353 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 TRIM77I1YAP6 450 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 DIAPH2O60879 1101 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 LRCH4O75427 683 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 TADA2AO75478 443 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 ACSL3O95573 720 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 RPLP0P05388 317 aaKnown RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 FDPSP14324 419 aaKnown RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 ANPEPP15144 967 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 KLK2P20151 261 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 BCL3P20749 454 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 GIFP27352 417 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 CSE1LP55060 971 aaKnown RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 PPIAP62937 165 aaKnown RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 POU5F1Q01860 360 aaKnown RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 BECN1Q14457 450 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 UPP1Q16831 310 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 FAM106AQ4KMX7 169 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 ZRANB3Q5FWF4 1079 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms