RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 NFKB2Q00653 900 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 DOC2AQ14183 400 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 SLC9A5Q14940 896 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 PCBP2Q15366 365 aaKnown RBP eCLIP18.65■□□□□ 0.58
CLN3-225ENST00000566824 KRT71Q3SY84 523 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 TCTE1Q5JU00 501 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 FAM69BQ5VUD6 431 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 RHBDD2Q6NTF9 364 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 ZNF517Q6ZMY9 492 aaPredicted RBP18.65■□□□□ 0.58
CLN3-225ENST00000566824 TTLL10Q6ZVT0 673 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 SHISA5Q8N114 240 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 RIBC1Q8N443 379 aaPredicted RBP18.65■□□□□ 0.58
CLN3-225ENST00000566824 IL22RA1Q8N6P7 574 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 MR1Q95460 341 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 TM4SF19Q96DZ7 209 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 NSUN5Q96P11 429 aaKnown RBP18.65■□□□□ 0.58
CLN3-225ENST00000566824 GBP5Q96PP8 586 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 SLC22A11Q9NSA0 550 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 CUTCQ9NTM9 273 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 CROTQ9UKG9 612 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 PADI1Q9ULC6 663 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 MRPS18BQ9Y676 258 aaKnown RBP18.65■□□□□ 0.58
CLN3-225ENST00000566824 AP1M2Q9Y6Q5 423 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 CFAP47Q6ZTR5 3102 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 TRBC2A0A5B9 178 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 E2F3O00716 465 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 PROCP04070 461 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 SCTRP47872 440 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 FOXL2P58012 376 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 ABHD18Q0P651 414 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 SLBPQ14493 270 aaKnown RBP eCLIP18.64■□□□□ 0.57
CLN3-225ENST00000566824 GRM7Q14831 915 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 ATG9BQ674R7 924 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 C19orf48Q6RUI8 117 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 GOLGA7Q7Z5G4 137 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 SRRM1Q8IYB3 904 aaKnown RBP18.64■□□□□ 0.57
CLN3-225ENST00000566824 LRFN5Q96NI6 719 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 NDC1Q9BTX1 674 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 SARGQ9BW04 601 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 SLC7A5P2Q9GIP4 190 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 AICDAQ9GZX7 198 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 CPNE5Q9HCH3 593 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 GPRC5BQ9NZH0 403 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 DCDC2Q9UHG0 476 aa18.64■□□□□ 0.57
CLN3-225ENST00000566824 ZNF490Q9ULM2 529 aaPredicted RBP18.64■□□□□ 0.57
CLN3-225ENST00000566824 G3V2L1 256 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 CLGNO14967 610 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 SMIM24O75264 130 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 SPAG7O75391 227 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 ERLIN1O75477 346 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 ALAS2P22557 587 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 CRHR1P34998 444 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 ATP1A2P50993 1020 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 CYP4F2P78329 520 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 CHIT1Q13231 466 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 RBBP5Q15291 538 aaKnown RBP18.63■□□□□ 0.57
CLN3-225ENST00000566824 XKR6Q5GH73 641 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 MANEAQ5SRI9 462 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 CEP85LQ5SZL2 805 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 FAM198BQ6UWH4 519 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 LRRC69Q6ZNQ3 347 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 VN1R5Q7Z5H4 357 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 LCA5Q86VQ0 697 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 BANPQ8N9N5 519 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 TTC29Q8NA56 475 aaPredicted RBP18.63■□□□□ 0.57
CLN3-225ENST00000566824 KCT2Q8NC54 265 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 MYRIPQ8NFW9 859 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 RERGQ96A58 199 aaPredicted RBP18.63■□□□□ 0.57
CLN3-225ENST00000566824 WDR34Q96EX3 536 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 CCNL2Q96S94 520 aaPredicted RBP18.63■□□□□ 0.57
CLN3-225ENST00000566824 ZBTB26Q9HCK0 441 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 NDOR1Q9UHB4 597 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 PCTPQ9UKL6 214 aa18.63■□□□□ 0.57
CLN3-225ENST00000566824 A0A1B0GTL3 188 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 STX16-NPEPL1H3BU86 382 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 PPP6CO00743 305 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 COPEO14579 308 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 OR7A17O14581 309 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 STX16O14662 325 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 DSCR3O14972 297 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 PLIN3O60664 434 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 CNOT3O75175 753 aaKnown RBP18.62■□□□□ 0.57
CLN3-225ENST00000566824 GLRA3O75311 464 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 WFS1O76024 890 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 CCNYL3P0C7X3 344 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 TSPAN8P19075 237 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 TCN2P20062 427 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 DLSTP36957 453 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 OR1D4P47884 311 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 RPS18P62269 152 aaKnown RBP18.62■□□□□ 0.57
CLN3-225ENST00000566824 GTF2H2Q13888 395 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 GTF2H2CQ6P1K8 395 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 PRSS41Q7RTY9 318 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 ASPGQ86U10 573 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLN3-225ENST00000566824 SLC13A3Q8WWT9 602 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 THAP11Q96EK4 314 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 AIF1LQ9BQI0 150 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 TXLNGQ9NUQ3 528 aa18.62■□□□□ 0.57
CLN3-225ENST00000566824 SRPK3Q9UPE1 567 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms