RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 C8orf44Q96CB5 159 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 FBXL8Q96CD0 374 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 ERP44Q9BS26 406 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 DPH5Q9H2P9 285 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 EPS8L2Q9H6S3 715 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 ZNF160Q9HCG1 818 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 WHRNQ9P202 907 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 NOVA2Q9UNW9 492 aaKnown RBP15.99■□□□□ 0.15
CLK3-210ENST00000563112 PSAT1Q9Y617 370 aa15.99■□□□□ 0.15
CLK3-210ENST00000563112 USP9XQ93008 2570 aaPredicted RBP15.99■□□□□ 0.15
CLK3-210ENST00000563112 TP73O15350 636 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 NSA2O95478 260 aaKnown RBP15.98■□□□□ 0.15
CLK3-210ENST00000563112 GUCA1CO95843 209 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 STATHP02808 62 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 SLC35G6P0C7Q6 338 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 GNLYP22749 145 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 PGGT1BP53609 377 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 SLC12A2P55011 1212 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 MRPS25P82663 173 aaKnown RBP15.98■□□□□ 0.15
CLK3-210ENST00000563112 CBLBQ13191 982 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 FASTKD3Q14CZ7 662 aaKnown RBP15.98■□□□□ 0.15
CLK3-210ENST00000563112 KBTBD2Q8IY47 623 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 ARHGEF39Q8N4T4 335 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 OR9A4Q8NGU2 314 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 METTL21AQ8WXB1 218 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 ANKRD7Q92527 254 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 CDKL2Q92772 493 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 PYCR2Q96C36 320 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 WDR77Q9BQA1 342 aaPredicted RBP15.98■□□□□ 0.15
CLK3-210ENST00000563112 ZBTB20Q9HC78 741 aaPredicted RBP15.98■□□□□ 0.15
CLK3-210ENST00000563112 ANKHQ9HCJ1 492 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 MKL2Q9ULH7 1088 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 SH2B3Q9UQQ2 575 aa15.98■□□□□ 0.15
CLK3-210ENST00000563112 MRPS2Q9Y399 296 aaKnown RBP15.98■□□□□ 0.15
CLK3-210ENST00000563112 ESPL1Q14674 2120 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 FEZF1A0PJY2 475 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 FANCGO15287 622 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 EIF3HO15372 352 aaKnown RBP eCLIP15.97■□□□□ 0.15
CLK3-210ENST00000563112 UQCRHP07919 91 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 ZNF37AP17032 561 aaPredicted RBP15.97■□□□□ 0.15
CLK3-210ENST00000563112 BCL6P41182 706 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 AP2B1P63010 937 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 MAT1AQ00266 395 aaKnown RBP15.97■□□□□ 0.15
CLK3-210ENST00000563112 EEF1A2Q05639 463 aaKnown RBP15.97■□□□□ 0.15
CLK3-210ENST00000563112 CSHL1Q14406 222 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 SYT16Q17RD7 645 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 PRR30Q53SZ7 412 aaPredicted RBP15.97■□□□□ 0.15
CLK3-210ENST00000563112 FAAH2Q6GMR7 532 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 ISLR2Q6UXK2 745 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 Q6ZS92 163 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 CAPN12Q6ZSI9 719 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 ZC3H7AQ8IWR0 971 aaKnown RBP15.97■□□□□ 0.15
CLK3-210ENST00000563112 CISD2Q8N5K1 135 aaKnown RBP15.97■□□□□ 0.15
CLK3-210ENST00000563112 MFSD9Q8NBP5 474 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 ABHD11Q8NFV4 315 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 DNAJB14Q8TBM8 379 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 PPP4R1Q8TF05 950 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 TM4SF19Q96DZ7 209 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 RHOJQ9H4E5 214 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 SAYSD1Q9NPB0 183 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 RIC8BQ9NVN3 520 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 TXNDC16Q9P2K2 825 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 DYRK1BQ9Y463 629 aa15.97■□□□□ 0.15
CLK3-210ENST00000563112 SHANK1Q9Y566 2161 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 CLEC18AA5D8T8 446 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 RAD51CO43502 376 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 OR1F1O43749 312 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 LCMT2O60294 686 aaKnown RBP15.96■□□□□ 0.15
CLK3-210ENST00000563112 COX6A1P12074 109 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 IL1RNP18510 177 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 UQCRFS1P47985 274 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 GLRBP48167 497 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 TAS2R39P59534 338 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 ETF1P62495 437 aaKnown RBP15.96■□□□□ 0.15
CLK3-210ENST00000563112 C2orf54Q08AI8 447 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 Q0VFX4 171 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 FHL5Q5TD97 284 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 MFSD4BQ5TF39 518 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 TMEM214Q6NUQ4 689 aaKnown RBP15.96■□□□□ 0.15
CLK3-210ENST00000563112 SBSNQ6UWP8 590 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 IGFL2Q6UWQ7 119 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 TMEM207Q6UWW9 146 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 CLEC18BQ6UXF7 455 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 CLEC18CQ8NCF0 446 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 ZCCHC10Q8TBK6 192 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 SLC5A11Q8WWX8 675 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 SNRNP40Q96DI7 357 aaKnown RBP15.96■□□□□ 0.15
CLK3-210ENST00000563112 LMF1Q96S06 567 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 EGFL8Q99944 293 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 MACROD1Q9BQ69 325 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 POPDC3Q9HBV1 291 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 GPAMQ9HCL2 828 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 CTNNAL1Q9UBT7 734 aa15.96■□□□□ 0.15
CLK3-210ENST00000563112 UTP11Q9Y3A2 253 aaKnown RBP15.96■□□□□ 0.15
CLK3-210ENST00000563112 COPG1Q9Y678 874 aaKnown RBP15.96■□□□□ 0.15
CLK3-210ENST00000563112 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.96■□□□□ 0.15
CLK3-210ENST00000563112 USP9YO00507 2555 aaPredicted RBP15.96■□□□□ 0.15
CLK3-210ENST00000563112 IGHV1-45A0A0A0MS14 117 aa15.95■□□□□ 0.14
CLK3-210ENST00000563112 A0A1W2PQ72 361 aa15.95■□□□□ 0.14
CLK3-210ENST00000563112 TRBC2A0A5B9 178 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms