RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 USP9XQ93008 2570 aaPredicted RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 KCNE1BA0A087WTH5 132 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 IGHV3-20A0A0C4DH32 117 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 SGK494L7N484 410 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 SLC16A5O15375 505 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 DDAH2O95865 285 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 SERPINA7P05543 415 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 UQCRHP07919 91 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 HIST1H2AGP0C0S8 130 aaPredicted RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 ITGAMP11215 1152 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 CDH1P12830 882 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 NPPBP16860 134 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 TCP1P17987 556 aaKnown RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 IL1RNP18510 177 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 HIST1H2ADP20671 130 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 COL8A1P27658 744 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 BCL6P41182 706 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 TSFMP43897 325 aaKnown RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 IL2P60568 153 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 RPS15AP62244 130 aaKnown RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 MEF2AQ02078 507 aaPredicted RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 PDAP1Q13442 181 aaKnown RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 PCOLCEQ15113 449 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 ZXDCQ2QGD7 858 aaPredicted RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 MINDY4Q4G0A6 757 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 HECTD2Q5U5R9 776 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 LRRC8EQ6NSJ5 796 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 TMEM205Q6UW68 189 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 SLC26A11Q86WA9 606 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 ANKMY2Q8IV38 441 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 PDIK1LQ8N165 341 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 KCT2Q8NC54 265 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 OR51Q1Q8NH59 317 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 ZCCHC10Q8TBK6 192 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 METTL21AQ8WXB1 218 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 SLCO2A1Q92959 643 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 PYCR2Q96C36 320 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 THAP11Q96EK4 314 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 HIST1H2AHQ96KK5 128 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 MAGEB10Q96LZ2 347 aaPredicted RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 CYTH2Q99418 400 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 HIST1H2AJQ99878 128 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 TRIM51Q9BSJ1 452 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 NAT9Q9BTE0 207 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 H2AFJQ9BTM1 129 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 SGPP1Q9BX95 441 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 TRIM31Q9BZY9 425 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 VN1R1Q9GZP7 353 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 ZNF700Q9H0M5 742 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 ARL15Q9NXU5 204 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 SLC5A6Q9Y289 635 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 VWA7Q9Y334 891 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 NAV2Q8IVL1 2488 aa9.68□□□□□ -0.86
LDLR-214ENST00000560628 SPENQ96T58 3664 aaKnown RBP9.68□□□□□ -0.86
LDLR-214ENST00000560628 USP9YO00507 2555 aaPredicted RBP9.67□□□□□ -0.86
LDLR-214ENST00000560628 LOC102723996A0A087X1L8 192 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 DYTNA2CJ06 578 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 A8MUI8 341 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 H0YIG0 161 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 SEC24DO94855 1032 aaPredicted RBP9.67□□□□□ -0.86
LDLR-214ENST00000560628 NSA2O95478 260 aaKnown RBP9.67□□□□□ -0.86
LDLR-214ENST00000560628 GUCA1CO95843 209 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 TSPAN12O95859 305 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 LDLRP01130 860 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 C8orf89P0DMQ9 161 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 SAT1P21673 171 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 GRK3P35626 688 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 SOX11P35716 441 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 XCR1P46094 333 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 ITGA8P53708 1063 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 GNG11P61952 73 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 DR1Q01658 176 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 SRSF11Q05519 484 aaKnown RBP9.67□□□□□ -0.86
LDLR-214ENST00000560628 MORF4L2Q15014 288 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 CAPN13Q6MZZ7 669 aaPredicted RBP9.67□□□□□ -0.86
LDLR-214ENST00000560628 TMEM214Q6NUQ4 689 aaKnown RBP9.67□□□□□ -0.86
LDLR-214ENST00000560628 LCTLQ6UWM7 567 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 KIAA0408Q6ZU52 694 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 LANCL3Q6ZV70 420 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 ASPGQ86U10 573 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 CREG2Q8IUH2 290 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 CNTN4Q8IWV2 1026 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 CAMKVQ8NCB2 501 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 ST6GALNAC3Q8NDV1 305 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 FAR1Q8WVX9 515 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 SLC13A3Q8WWT9 602 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 HAS2Q92819 552 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 TM4SF19Q96DZ7 209 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 MOCOSQ96EN8 888 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 SNF8Q96H20 258 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 IMMP1LQ96LU5 166 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 C5orf34Q96MH7 638 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 OR4K3Q96R72 315 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 OLFM1Q99784 485 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 WDR83Q9BRX9 315 aaKnown RBP9.67□□□□□ -0.86
LDLR-214ENST00000560628 TRIM54Q9BYV2 358 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.67□□□□□ -0.86
LDLR-214ENST00000560628 ANKHQ9HCJ1 492 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 RIC8BQ9NVN3 520 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 STMN3Q9NZ72 180 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms