RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 VPS39Q96JC1 886 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 RUNDC3BQ96NL0 473 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 ERP44Q9BS26 406 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 AICDAQ9GZX7 198 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 DRC3Q9H069 523 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 ATP13A2Q9NQ11 1180 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 ASH1LQ9NR48 2969 aaKnown RBP17.28■□□□□ 0.36
SHMT2-206ENST00000553529 NBASA2RRP1 2371 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 TCP11X1B4DZS4 312 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 SLC16A5O15375 505 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 RDH16O75452 317 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 WISP3O95389 354 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-206ENST00000553529 PIM1P11309 404 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-206ENST00000553529 VARSP26640 1264 aaKnown RBP17.27■□□□□ 0.36
SHMT2-206ENST00000553529 GDF5P43026 501 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 OCA2Q04671 838 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 AIMP2Q13155 320 aaKnown RBP17.27■□□□□ 0.36
SHMT2-206ENST00000553529 ATG9BQ674R7 924 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 B3GNTL1Q67FW5 361 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-206ENST00000553529 TMEM214Q6NUQ4 689 aaKnown RBP17.27■□□□□ 0.36
SHMT2-206ENST00000553529 LCTLQ6UWM7 567 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 C17orf64Q86WR6 236 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 CATSPER1Q8NEC5 780 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 NEIL2Q969S2 332 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 ESAMQ96AP7 390 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 LRRC39Q96DD0 335 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 SNRNP40Q96DI7 357 aaKnown RBP17.27■□□□□ 0.36
SHMT2-206ENST00000553529 TM4SF19Q96DZ7 209 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 SEMA3GQ9NS98 782 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 ASF1BQ9NVP2 202 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 COL12A1Q99715 3063 aa17.27■□□□□ 0.36
SHMT2-206ENST00000553529 SETXQ7Z333 2677 aaKnown RBP17.26■□□□□ 0.35
SHMT2-206ENST00000553529 TCRBV9S1A1TA0A576 114 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 CLEC18AA5D8T8 446 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 NCF1BA6NI72 391 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-206ENST00000553529 NCF1CA8MVU1 366 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-206ENST00000553529 CDC123O75794 336 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-206ENST00000553529 NCF1P14598 390 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-206ENST00000553529 ACPPP15309 386 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 EMP2P54851 167 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 ETF1P62495 437 aaKnown RBP17.26■□□□□ 0.35
SHMT2-206ENST00000553529 CLEC18BQ6UXF7 455 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 ASPGQ86U10 573 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 PALM2Q8IXS6 379 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 SIRT6Q8N6T7 355 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 CLEC18CQ8NCF0 446 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 PNPLA2Q96AD5 504 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 FBXL8Q96CD0 374 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 IP6K3Q96PC2 410 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 SLAMF7Q9NQ25 335 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 PLA2G3Q9NZ20 509 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 NXT1Q9UKK6 140 aaKnown RBP17.26■□□□□ 0.35
SHMT2-206ENST00000553529 SCN2AQ99250 2005 aa17.26■□□□□ 0.35
SHMT2-206ENST00000553529 FAM187AA6NFU0 413 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 MAP2K7O14733 419 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 OR1F1O43749 312 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 SEMA7AO75326 666 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 SERPIND1P05546 499 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 ANXA5P08758 320 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 PLTPP55058 493 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 SOX8P57073 446 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 RPS15AP62244 130 aaKnown RBP17.25■□□□□ 0.35
SHMT2-206ENST00000553529 FRG1Q14331 258 aaKnown RBP17.25■□□□□ 0.35
SHMT2-206ENST00000553529 NAA25Q14CX7 972 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 PCOLCEQ15113 449 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 ADNP2Q6IQ32 1131 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 CAPN13Q6MZZ7 669 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-206ENST00000553529 LRRC8EQ6NSJ5 796 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 CCDC25Q86WR0 208 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 ANKRD53Q8N9V6 530 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 MFSD9Q8NBP5 474 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 FBXO25Q8TCJ0 367 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 BRIX1Q8TDN6 353 aaKnown RBP17.25■□□□□ 0.35
SHMT2-206ENST00000553529 PYROXD1Q8WU10 500 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 PSMF1Q92530 271 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 CNDP1Q96KN2 507 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 VN1R1Q9GZP7 353 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 RHOJQ9H4E5 214 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 WHRNQ9P202 907 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 MKL2Q9ULH7 1088 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 SLC22A14Q9Y267 594 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 ASB1Q9Y576 335 aa17.25■□□□□ 0.35
SHMT2-206ENST00000553529 IGHV1-45A0A0A0MS14 117 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 NDUFS4O43181 175 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 BMP10O95393 424 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 HEXBP07686 556 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 CD63P08962 238 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 HIST1H2AGP0C0S8 130 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-206ENST00000553529 ITGAMP11215 1152 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 HIST1H2ADP20671 130 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 HNF4AP41235 474 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 EMP3P54852 163 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 UBAP2LQ14157 1087 aaKnown RBP17.24■□□□□ 0.35
SHMT2-206ENST00000553529 OR4D1Q15615 310 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 EIF2S3LQ2VIR3 472 aaKnown RBP17.24■□□□□ 0.35
SHMT2-206ENST00000553529 CRB2Q5IJ48 1285 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 MFSD4BQ5TF39 518 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 TMPRSS11BQ86T26 416 aa17.24■□□□□ 0.35
SHMT2-206ENST00000553529 THOC6Q86W42 341 aaKnown RBP17.24■□□□□ 0.35
SHMT2-206ENST00000553529 OR51Q1Q8NH59 317 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms