RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NDUFV2P19404 249 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 FASP25445 335 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 HPCAL1P37235 193 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 SMAD4Q13485 552 aaKnown RBP25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 TMEM92Q6UXU6 159 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 AMIGO2Q86SJ2 522 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 C2orf73Q8N5S3 287 aaPredicted RBP25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 GPR156Q8NFN8 814 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 ABHD11Q8NFV4 315 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 GATA6Q92908 595 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 CAMK1GQ96NX5 476 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 PRPF18Q99633 342 aaKnown RBP25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 RAB11FIP5Q9BXF6 653 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 SEMA6AQ9H2E6 1030 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 Q9H521 79 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 IKZF5Q9H5V7 419 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 MVB12BQ9H7P6 319 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 NT5DC2Q9H857 520 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 SLC6A13Q9NSD5 602 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 TAC3Q9UHF0 121 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 MOSPD1Q9UJG1 213 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 RAB26Q9ULW5 256 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 PTX3P26022 381 aaPredicted RBP25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 OXTRP30559 389 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 MED21Q13503 144 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 SF1Q15637 639 aaKnown RBP25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 MLF2Q15773 248 aaPredicted RBP25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 IER5LQ5T953 404 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 DUS1LQ6P1R4 473 aaKnown RBP25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 ANKRD46Q86W74 232 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 METTL4Q8N3J2 472 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 OR52E4Q8NGH9 312 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 SH3KBP1Q96B97 665 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 AIF1LQ9BQI0 150 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 RHBGQ9H310 441 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 AGPAT4Q9NRZ5 378 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 NUMA1Q14980 2115 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 CUL9Q8IWT3 2517 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 PCM1Q15154 2024 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 A0A1W2PPV9 198 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 ELOVL7A1L3X0 281 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 MAGEA13PA6NCF6 341 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 GSTA4O15217 222 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 SH3BGRLO75368 114 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 TGFB1P01137 390 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 ZNF26P17031 533 aaPredicted RBP25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 SERPINB1P30740 379 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 MEF2AQ02078 507 aaPredicted RBP25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 FOLH1Q04609 750 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 ARMCX6Q7L4S7 300 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 MICU2Q8IYU8 434 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 COQ8BQ96D53 544 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 PLEKHM1Q9Y4G2 1056 aa25.31■■□□□ 1.64
CCDC88C-205ENST00000553403 PRSS38A1L453 326 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 FPGTO14772 594 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 MBTPS2O43462 519 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 DENRO43583 198 aaKnown RBP25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 SCELO95171 688 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 CDKN2CP42773 168 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 GZMMP51124 257 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 CCR8P51685 355 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 ZNF763Q0D2J5 394 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 CCINQ13939 588 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 UAP1L1Q3KQV9 507 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 CPTPQ5TA50 214 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 ANXA8L1Q5VT79 327 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 COMMD6Q7Z4G1 85 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 ZNF740Q8NDX6 193 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 CDC26Q8NHZ8 85 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 FAM110BQ8TC76 370 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 FAM3CQ92520 227 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 FAM120BQ96EK7 910 aaKnown RBP25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 OR2M4Q96R27 311 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 MYOCQ99972 504 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 DUSP26Q9BV47 211 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 ACAT2Q9BWD1 397 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 OR51B5Q9H339 312 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 COQ10BQ9H8M1 238 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 FGF22Q9HCT0 170 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 ATP6V1HQ9UI12 483 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 BTNL2Q9UIR0 455 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 REV3LO60673 3130 aa25.3■■□□□ 1.64
CCDC88C-205ENST00000553403 GNG14A0A1W2PPG7 69 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 LRRC72A6NJI9 287 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 SHISA7A6NL88 538 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 SOX11P35716 441 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 TPMTP51580 245 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 REEP5Q00765 189 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 ABHD18Q0P651 414 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 LRRC74AQ0VAA2 488 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 NFATC4Q14934 902 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 CLCA4Q14CN2 919 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 HKDC1Q2TB90 917 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 VN1R5Q7Z5H4 357 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 OR4K1Q8NGD4 311 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 PUM2Q8TB72 1066 aaKnown RBP eCLIP25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 POP5Q969H6 163 aaKnown RBP25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 IMP3Q9NV31 184 aaKnown RBP25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 TCRBV21S2A2A0A5A6 115 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 POM121BA6NF01 834 aa25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms