RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 MYZAPP0CAP1 466 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 P4HA1P13674 534 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ACHEP22303 614 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 DCTP40126 519 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 NT5C2P49902 561 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 CDH12P55289 794 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 CDH13P55290 713 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 MZT1Q08AG7 82 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 SRSF6Q13247 344 aaKnown RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 MAD2L1Q13257 205 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ALX1Q15699 326 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 TAZQ16635 292 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 KCNT1Q5JUK3 1230 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 GLRA4Q5JXX5 417 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 HES3Q5TGS1 186 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ZDHHC20Q5W0Z9 365 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 PLA2G4FQ68DD2 849 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 HEPHL1Q6MZM0 1159 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ALKBH5Q6P6C2 394 aaKnown RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 PQLC2Q6ZP29 291 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ZBTB49Q6ZSB9 765 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 FAM57BQ71RH2 274 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 LDB1Q86U70 411 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 SFTPA2Q8IWL1 248 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 MB21D2Q8IYB1 491 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ATAD1Q8NBU5 361 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ZNF248Q8NDW4 579 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 OR1J2Q8NGS2 313 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 BCAS4Q8TDM0 211 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 CD101Q93033 1021 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 MR1Q95460 341 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 TMEM143Q96AN5 459 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 SPACA9Q96E40 222 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 FAM20AQ96MK3 541 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ZNF830Q96NB3 372 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 PGLYRP2Q96PD5 576 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 GFM1Q96RP9 751 aaKnown RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ACOX2Q99424 681 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 PI4K2AQ9BTU6 479 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 DUSP26Q9BV47 211 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 SLC5A7Q9GZV3 580 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ST6GALNAC4Q9H4F1 302 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 RAD21L1Q9H4I0 556 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 THAP9Q9H5L6 903 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 MVB12BQ9H7P6 319 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 NOL11Q9H8H0 719 aaKnown RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ANKZF1Q9H8Y5 726 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 PSTPIP2Q9H939 334 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 NRBP2Q9NSY0 501 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ECHDC1Q9NTX5 307 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 SYBUQ9NX95 663 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 DPP3Q9NY33 737 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 LARSQ9P2J5 1176 aaKnown RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 CRNNQ9UBG3 495 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 UBA2Q9UBT2 640 aaPredicted RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 CLIC4Q9Y696 253 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 SPG11Q96JI7 2443 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 MYO16Q9Y6X6 1858 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 TACC2O95359 2948 aa3.66□□□□□ -1.82
LIMA1-208ENST00000551691 TDRD15B5MCY1 1934 aaKnown RBP3.66□□□□□ -1.82
LIMA1-208ENST00000551691 ZFC3H1O60293 1989 aaKnown RBP3.65□□□□□ -1.82
LIMA1-208ENST00000551691 MED13LQ71F56 2210 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 IGHV1OR15-9A0A0B4J2B8 117 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 A0A1W2PRV1 198 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 ESYT2A0FGR8 921 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 SYCE3A1L190 88 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 A4D1N5 150 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 VPS37CA5D8V6 355 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 KDM4EB2RXH2 506 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 FAM86B1E9PN63 330 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 SLC33A1O00400 549 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 RTCAO00442 366 aaKnown RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 HSPB6O14558 160 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 PTGESO14684 152 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 HS3ST1O14792 307 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 SMAD9O15198 467 aaKnown RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 B4GALT5O43286 388 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 ZBTB43O43298 467 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 AP5Z1O43299 807 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 B3GALNT1O75752 331 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 B3GAT3O94766 335 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 MOCS3O95396 460 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 SNRNP70P08621 437 aaKnown RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 FAM86B2P0C5J1 330 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 OR4Q2P0C623 313 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 LINGO3P0C6S8 592 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 CYP2A6P11509 494 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 PRF1P14222 555 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 DESP17661 470 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 MYF6P23409 242 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 GABRR2P28476 465 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 CD38P28907 300 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 MATKP42679 507 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 CSNK1EP49674 416 aaKnown RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 SNRPEP62304 92 aaKnown RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 CBX3Q13185 183 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 ZNF169Q14929 603 aaPredicted RBP3.65□□□□□ -1.83
LIMA1-208ENST00000551691 MEP1AQ16819 746 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 SOWAHAQ2M3V2 549 aa3.65□□□□□ -1.83
LIMA1-208ENST00000551691 KIF19Q2TAC6 998 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms