RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	CAPN2	P17655	700 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	BDNF	P23560	247 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	EEF1D	P29692	281 aa	Known RBP	4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	CACNG1	Q06432	222 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	FAM189A2	Q15884	450 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	ZNF239	Q16600	458 aa	Known RBP	4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	SUSD4	Q5VX71	490 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	SLC30A6	Q6NXT4	461 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	GDPGP1	Q6ZNW5	385 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	CPEB2	Q7Z5Q1	589 aa	Known RBP	4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	ZER1	Q7Z7L7	766 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	ZFAND4	Q86XD8	727 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	OR4D10	Q8NGI6	311 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	LRRC15	Q8TF66	581 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	FOXN4	Q96NZ1	517 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	GAL3ST4	Q96RP7	486 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	SLC25A23	Q9BV35	468 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	FN3K	Q9H479	309 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	ST6GALNAC4	Q9H4F1	302 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	RAVER2	Q9HCJ3	691 aa	Known RBP	4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	CCL27	Q9Y4X3	112 aa		4.93	□□□□□ -1.62
YBX3-210	ENST00000540975	TFEC	O14948	347 aa	Predicted RBP	4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	IGHV3-13	P01766	116 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	DNTT	P04053	509 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	THEGL	P0DJG4	465 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	AADAC	P22760	399 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	HSPA4	P34932	840 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	SFTPD	P35247	375 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	PGF	P49763	221 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	COX10	Q12887	443 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	CHST3	Q7LGC8	479 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	ERC1	Q8IUD2	1116 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	MRPS27	Q92552	414 aa	Known RBP	4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	SPATA33	Q96N06	139 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	NAA11	Q9BSU3	229 aa	Predicted RBP	4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	RIMS4	Q9H426	269 aa	Predicted RBP	4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	RABEP2	Q9H5N1	569 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	TBC1D13	Q9NVG8	400 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	PKD2L2	Q9NZM6	624 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	LNPEP	Q9UIQ6	1025 aa		4.92	□□□□□ -1.62
YBX3-210	ENST00000540975	HEG1	Q9ULI3	1381 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	ACAT1	P24752	427 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	CDC25C	P30307	473 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	DUT	P33316	252 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	KRT20	P35900	424 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	MTCP1	P56278	107 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	OR1D5	P58170	312 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	DHODH	Q02127	395 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	COG2	Q14746	738 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	OR4C11	Q6IEV9	310 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	LCLAT1	Q6UWP7	414 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	SPAG16	Q8N0X2	631 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	TCEANC	Q8N8B7	351 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	LGMN	Q99538	433 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	DNAI2	Q9GZS0	605 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	SNX25	Q9H3E2	840 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	HACD3	Q9P035	362 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	SWAP70	Q9UH65	585 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	IL36A	Q9UHA7	158 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	KAT6B	Q8WYB5	2073 aa		4.91	□□□□□ -1.62
YBX3-210	ENST00000540975	C17orf105	B2RV13	164 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	CD59	P13987	128 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	MYOG	P15173	224 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	TCF4	P15884	667 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	PSMA3	P25788	255 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	HOXC13	P31276	330 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	KRT2	P35908	639 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	CSRP3	P50461	194 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	MZT1	Q08AG7	82 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	RBBP7	Q16576	425 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	SUSD1	Q6UWL2	747 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	ENPP7	Q6UWV6	458 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	CDC20B	Q86Y33	519 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	CCDC60	Q8IWA6	550 aa	Predicted RBP	4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	FAM9B	Q8IZU0	186 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	SEPT1	Q8WYJ6	367 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	KATNB1	Q9BVA0	655 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	GTPBP2	Q9BX10	602 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	RAB11FIP5	Q9BXF6	653 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	PARL	Q9H300	379 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	THAP10	Q9P2Z0	257 aa	Predicted RBP	4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	LIPG	Q9Y5X9	500 aa		4.9	□□□□□ -1.63
YBX3-210	ENST00000540975	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	4.89	□□□□□ -1.63
YBX3-210	ENST00000540975		A8MXK9	166 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975		G3V2L1	256 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975		K7EQD1	137 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	SLC1A7	O00341	560 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	SURF4	O15260	269 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	FIBP	O43427	364 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	TLX2	O43763	284 aa	Predicted RBP	4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	CYTIP	O60759	359 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	SRSF10	O75494	262 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	RGS7	P49802	495 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	NUCB1	Q02818	461 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	ZNF177	Q13360	481 aa	Predicted RBP	4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	CAMK2D	Q13557	499 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	DUSP5	Q16690	384 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	C3P1	Q6ZMU1	363 aa		4.89	□□□□□ -1.63
YBX3-210	ENST00000540975	AMIGO1	Q86WK6	493 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms