RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 RPS15AP62244 130 aaKnown RBP10.73□□□□□ -0.69
VPS28-214ENST00000531032 TBPL1P62380 186 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 ZNF33BQ06732 778 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 PTK6Q13882 451 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 LONRF1Q17RB8 773 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 PLAG1Q6DJT9 500 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 TMEM214Q6NUQ4 689 aaKnown RBP10.73□□□□□ -0.69
VPS28-214ENST00000531032 GFRALQ6UXV0 394 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 UBE2R2Q712K3 238 aaPredicted RBP10.73□□□□□ -0.69
VPS28-214ENST00000531032 PRSS41Q7RTY9 318 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 PIWIL4Q7Z3Z4 852 aaKnown RBP10.73□□□□□ -0.69
VPS28-214ENST00000531032 CPEB2Q7Z5Q1 589 aaKnown RBP10.73□□□□□ -0.69
VPS28-214ENST00000531032 PCGF5Q86SE9 256 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 CPNE9Q8IYJ1 553 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 SHISA5Q8N114 240 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 AGGF1Q8N302 714 aaeCLIP10.73□□□□□ -0.69
VPS28-214ENST00000531032 DNAJB8Q8NHS0 232 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 SUN3Q8TAQ9 357 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 CALML6Q8TD86 181 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 ITLN2Q8WWU7 325 aaPredicted RBP10.73□□□□□ -0.69
VPS28-214ENST00000531032 METTL21AQ8WXB1 218 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 THAP11Q96EK4 314 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 CYTH2Q99418 400 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 STMN3Q9NZ72 180 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 COPG2Q9UBF2 871 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 TEKT2Q9UIF3 430 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 FBXO5Q9UKT4 447 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 NEU2Q9Y3R4 380 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 SCN2AQ99250 2005 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 APCP25054 2843 aa10.73□□□□□ -0.69
VPS28-214ENST00000531032 ARHGAP10A1A4S6 786 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 PRSS44E7EML9 344 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 GOLGA8MH3BSY2 632 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 SEC24DO94855 1032 aaPredicted RBP10.72□□□□□ -0.69
VPS28-214ENST00000531032 HAUS5O94927 633 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 UNC5CO95185 931 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 MYBL2P10244 700 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 IL1RNP18510 177 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 BCL6P41182 706 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 XCR1P46094 333 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 CSNK1G2P78368 415 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 MPP1Q00013 466 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 ART3Q13508 389 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 CYP1B1Q16678 543 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.72□□□□□ -0.69
VPS28-214ENST00000531032 MINDY4Q4G0A6 757 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 SP5Q6BEB4 398 aaPredicted RBP10.72□□□□□ -0.69
VPS28-214ENST00000531032 LRRC8EQ6NSJ5 796 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 H3F3CQ6NXT2 135 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 TMEM207Q6UWW9 146 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 LANCL3Q6ZV70 420 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 RASGEF1CQ8N431 466 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 OR51Q1Q8NH59 317 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 MCOLN3Q8TDD5 553 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 TM4SF19Q96DZ7 209 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 SIGLEC10Q96LC7 697 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 CCDC138Q96M89 665 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 FAM167BQ9BTA0 163 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 AARSD1Q9BTE6 412 aaKnown RBP10.72□□□□□ -0.69
VPS28-214ENST00000531032 FAM129AQ9BZQ8 928 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 UNKQ9C0B0 810 aaKnown RBP10.72□□□□□ -0.69
VPS28-214ENST00000531032 PCBD2Q9H0N5 130 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 C20orf96Q9NUD7 363 aaPredicted RBP10.72□□□□□ -0.69
VPS28-214ENST00000531032 HCN3Q9P1Z3 774 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 SEC14L3Q9UDX4 400 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 C19orf25Q9UFG5 118 aaPredicted RBP10.72□□□□□ -0.69
VPS28-214ENST00000531032 SH2B3Q9UQQ2 575 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 PDE10AQ9Y233 779 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 PCDHGB6Q9Y5F9 930 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 KLF2Q9Y5W3 355 aaPredicted RBP10.72□□□□□ -0.69
VPS28-214ENST00000531032 MYO7BQ6PIF6 2116 aa10.72□□□□□ -0.69
VPS28-214ENST00000531032 IGHV3-20A0A0C4DH32 117 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 ZSCAN12O43309 604 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 C8GP07360 202 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 CCND1P24385 295 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 COILP38432 576 aaPredicted RBP10.71□□□□□ -0.69
VPS28-214ENST00000531032 CA7P43166 264 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 AGTR2P50052 363 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 TIAL1Q01085 375 aaKnown RBP eCLIP10.71□□□□□ -0.69
VPS28-214ENST00000531032 SP140Q13342 867 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 EXT1Q16394 746 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 BTBD16Q32M84 506 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 ACER2Q5QJU3 275 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 MFSD4BQ5TF39 518 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 UGT3A1Q6NUS8 523 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 ANKRD37Q7Z713 158 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 C17orf64Q86WR6 236 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 PDSS2Q86YH6 399 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 SRRM1Q8IYB3 904 aaKnown RBP10.71□□□□□ -0.69
VPS28-214ENST00000531032 BEST3Q8N1M1 668 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 NAT8LQ8N9F0 302 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.71□□□□□ -0.69
VPS28-214ENST00000531032 KCT2Q8NC54 265 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 CAMKVQ8NCB2 501 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 C2CD4AQ8NCU7 369 aaPredicted RBP10.71□□□□□ -0.69
VPS28-214ENST00000531032 MDS2Q8NDY4 140 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 MAGOHBQ96A72 148 aaKnown RBP10.71□□□□□ -0.69
VPS28-214ENST00000531032 CCDC120Q96HB5 630 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 NAP1L3Q99457 506 aaPredicted RBP10.71□□□□□ -0.69
VPS28-214ENST00000531032 MACROD1Q9BQ69 325 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms