RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 EEF1B2P24534 225 aaKnown RBP3.56□□□□□ -1.84
CD44-219ENST00000525685 SLC6A6P31641 620 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 MC5RP33032 325 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 LBX1P52954 281 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 BACE1P56817 501 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 TSPY1Q01534 308 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 CAMK2DQ13557 499 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 WDR38Q5JTN6 314 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 CST9LP1Q5W188 147 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 PLPPR4Q7Z2D5 763 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 CENPVQ7Z7K6 275 aaPredicted RBP3.56□□□□□ -1.84
CD44-219ENST00000525685 ARHGAP24Q8N264 748 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 GPATCH11Q8N954 259 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 ACER1Q8TDN7 264 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 ATL1Q8WXF7 558 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 RMDN1Q96DB5 314 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 HES6Q96HZ4 224 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 PARK7Q99497 189 aaKnown RBP3.56□□□□□ -1.84
CD44-219ENST00000525685 AP1M1Q9BXS5 423 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 LSG1Q9H089 658 aaKnown RBP3.56□□□□□ -1.84
CD44-219ENST00000525685 PELI2Q9HAT8 420 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 ZCCHC17Q9NP64 241 aaKnown RBP3.56□□□□□ -1.84
CD44-219ENST00000525685 PFDN4Q9NQP4 134 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 NFKBIL1Q9UBC1 381 aaPredicted RBP3.56□□□□□ -1.84
CD44-219ENST00000525685 AGTPBP1Q9UPW5 1226 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 TCF19Q9Y242 345 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 NME7Q9Y5B8 376 aa3.56□□□□□ -1.84
CD44-219ENST00000525685 RLFQ13129 1914 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ANKRD61A6NGH8 418 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 C19orf81C9J6K1 198 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 DNM1LO00429 736 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 PCDH7O60245 1069 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 NMT2O60551 498 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 PCP11498 1178 aaKnown RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 PAX1P15863 534 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 NR1D1P20393 614 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 MNDAP41218 407 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 NOVP48745 357 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 LINC01547P58512 204 aaPredicted RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 IMMTQ16891 758 aaKnown RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 TCP11X2Q5H9J9 407 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ELFN2Q5R3F8 820 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 GRTP1Q5TC63 336 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ARHGEF16Q5VV41 709 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 PLA2G4FQ68DD2 849 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 C11orf63Q6NUN7 778 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 MFSD12Q6NUT3 480 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 RBMS3Q6XE24 437 aaKnown RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 MEX3BQ6ZN04 569 aaKnown RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 SH2D5Q6ZV89 423 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 STOX1Q6ZVD7 989 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 CHST3Q7LGC8 479 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ISCA2Q86U28 154 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ZNF595Q8IYB9 648 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ZNF444Q8N0Y2 327 aaPredicted RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 SSMEM1Q8WWF3 244 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 VPS33AQ96AX1 596 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 RADILQ96JH8 1075 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 BAG1Q99933 345 aaPredicted RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 BTBD10Q9BSF8 475 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 NUP85Q9BW27 656 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 RNF41Q9H4P4 317 aaPredicted RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 RPAP3Q9H6T3 665 aaPredicted RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 VCPKMTQ9H867 229 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ANKZF1Q9H8Y5 726 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 SDF2L1Q9HCN8 221 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 NYAP2Q9P242 653 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 WDR35Q9P2L0 1181 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 B3GAT1Q9P2W7 334 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 CACNG4Q9UBN1 327 aa3.55□□□□□ -1.84
CD44-219ENST00000525685 ERRFI1Q9UJM3 462 aaPredicted RBP3.55□□□□□ -1.84
CD44-219ENST00000525685 MGAMO43451 1857 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 COL11A1P12107 1806 aaPredicted RBP3.54□□□□□ -1.84
CD44-219ENST00000525685 ZNF236Q9UL36 1845 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 URADA6NGE7 173 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 PMS2P5A8MQ11 134 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 WDR46O15213 610 aaKnown RBP3.54□□□□□ -1.84
CD44-219ENST00000525685 RANBP6O60518 1105 aaKnown RBP3.54□□□□□ -1.84
CD44-219ENST00000525685 DKC1O60832 514 aaKnown RBP eCLIP3.54□□□□□ -1.84
CD44-219ENST00000525685 PRKRAO75569 313 aaKnown RBP3.54□□□□□ -1.84
CD44-219ENST00000525685 CNMDO75829 334 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 PIGNO95427 931 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 NDUFB10O96000 172 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 FYNP06241 537 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 INHBAP08476 426 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 SMIM18P0DKX4 95 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 IGHV4-38-2P0DP08 117 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 TCEA1P23193 301 aaKnown RBP3.54□□□□□ -1.84
CD44-219ENST00000525685 JAK1P23458 1154 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 PTPN3P26045 913 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 CHRNB4P30926 498 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 IRX3P78415 501 aaPredicted RBP3.54□□□□□ -1.84
CD44-219ENST00000525685 SP3Q02447 781 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 LGALS3BPQ08380 585 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 PNRC1Q12796 327 aaPredicted RBP3.54□□□□□ -1.84
CD44-219ENST00000525685 PTPRCAPQ14761 206 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 PSMD6Q15008 389 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 KYNUQ16719 465 aa3.54□□□□□ -1.84
CD44-219ENST00000525685 DCAF10Q5QP82 559 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms