RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 HCFC1P51610 2035 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 ARHGEF33A8MVX0 844 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 SGK494L7N484 410 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 TXNDC9O14530 226 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 KPNA5O15131 536 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 SLC25A12O75746 678 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 MATN4O95460 622 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 PTMAP06454 111 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 EZRP15311 586 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 KLK2P20151 261 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 PTGS2P35354 604 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 RFC3P40938 356 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 CETN2P41208 172 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 TTPAP49638 278 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 TFF3Q07654 80 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 ACTN3Q08043 901 aaPredicted RBP19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 EXT1Q16394 746 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 NDUFA9Q16795 377 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 ANKRD20A4Q4UJ75 823 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 SFT2D3Q587I9 215 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 PAPD4Q6PIY7 484 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 SLC5A8Q8N695 610 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 LILRB4Q8NHJ6 448 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 FAM57AQ8TBR7 257 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 PKP4Q99569 1192 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 CHRAC1Q9NRG0 131 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 CCM2LQ9NUG4 571 aaPredicted RBP19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 ABCA2Q9BZC7 2435 aa19.12■□□□□ 0.65
SQSTM1-215ENST00000514093 INTS1Q8N201 2190 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 FOXO6A8MYZ6 492 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 H0YIG0 161 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 NDC80O14777 642 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 CBFA2T2O43439 604 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 NME2P1O60361 137 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 NDUFS3O75489 264 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 CDC123O75794 336 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 ZNF189O75820 626 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 TOXO94900 526 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 IL1RNP18510 177 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 NME2P22392 152 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 PTK6Q13882 451 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 CTSL3PQ5NE16 218 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 CCDC71Q8IV32 467 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 RPRMLQ8N4K4 120 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 KIF2BQ8N4N8 673 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 RBCK1Q9BYM8 510 aa19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 UTP6Q9NYH9 597 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-215ENST00000514093 ACANP16112 2415 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 CDC40O60508 579 aaKnown RBP eCLIP19.1■□□□□ 0.653e-6■□□□□ 9.5
SQSTM1-215ENST00000514093 NIPSNAP2O75323 286 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 NSA2O95478 260 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 MSX1P28360 303 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 FMO4P31512 558 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 AGTR2P50052 363 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 PNLIPRP1P54315 467 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 MYBPHQ13203 477 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 CES4AQ5XG92 561 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 ZNF227Q86WZ6 799 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 ASB5Q8WWX0 329 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 OLFM1Q99784 485 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 KCNJ16Q9NPI9 418 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 GALPQ9UBC7 116 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 SCN3AQ9NY46 2000 aa19.1■□□□□ 0.65
SQSTM1-215ENST00000514093 TCRBV7S2A1N4TA0A589 114 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 FAM221AA4D161 298 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 GOLGA6L9A6NEM1 432 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 AKR1B15C9JRZ8 316 aaPredicted RBP19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 H7BY64 318 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 MYO1CO00159 1063 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 CCNDBP1O95273 360 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 RPS3P23396 243 aaKnown RBP eCLIP19.09■□□□□ 0.653e-7■■■□□ 16.1
SQSTM1-215ENST00000514093 TPP2P29144 1249 aaPredicted RBP19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 CHRNB4P30926 498 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 BCL6P41182 706 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 NAP1L1P55209 391 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 TAS2R50P59544 299 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 PPP2R2AP63151 447 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 NSDHLQ15738 373 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 ACSBG2Q5FVE4 666 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 PRUNE1Q86TP1 453 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 RPS19BP1Q86WX3 136 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 SPNS2Q8IVW8 549 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 PPHLN1Q8NEY8 458 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 SLC35B2Q8TB61 432 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 ZCCHC10Q8TBK6 192 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 MCOLN3Q8TDD5 553 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 TSLPQ969D9 159 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 CCDC138Q96M89 665 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 PRAP1Q96NZ9 151 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 BIRC8Q96P09 236 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 LPAR4Q99677 370 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 FOXC2Q99958 501 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 CXXC4Q9H2H0 198 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 DUSP10Q9Y6W6 482 aa19.09■□□□□ 0.65
SQSTM1-215ENST00000514093 ERI2A8K979 691 aaKnown RBP19.08■□□□□ 0.64
SQSTM1-215ENST00000514093 E7EVH7 732 aa19.08■□□□□ 0.64
SQSTM1-215ENST00000514093 TFECO14948 347 aaPredicted RBP19.08■□□□□ 0.64
SQSTM1-215ENST00000514093 PDE9AO76083 593 aa19.08■□□□□ 0.64
SQSTM1-215ENST00000514093 ZWINTO95229 277 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms