RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CCR10P46092 362 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 SCTRP47872 440 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 NAA20P61599 178 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 RBBP5Q15291 538 aaKnown RBP28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 CEACAM20Q6UY09 585 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 VN1R4Q7Z5H5 301 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 ANKRD53Q8N9V6 530 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 MFSD9Q8NBP5 474 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 USP7Q93009 1102 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 MED4Q9NPJ6 270 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 RNF11Q9Y3C5 154 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 B3GALT1Q9Y5Z6 326 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 KCNE1BA0A087WTH5 132 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 H3BMH7 237 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 TIAF1O95411 115 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 LAPTM5Q13571 262 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 LIPJQ5W064 366 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 LETMD1Q6P1Q0 360 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 GPR135Q8IZ08 494 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 L3MBTL4Q8NA19 623 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 OR4F6Q8NGB9 312 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 THAP11Q96EK4 314 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 RNF31Q96EP0 1072 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 ZNF285Q96NJ3 590 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 PITHD1Q9GZP4 211 aaPredicted RBP28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 SPRTNQ9H040 489 aaPredicted RBP28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 STARD5Q9NSY2 213 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 SERTAD3Q9UJW9 196 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 STK38LQ9Y2H1 464 aa28.3■■■□□ 2.12
LIMCH1-211ENST00000509638 MED19A0JLT2 244 aaPredicted RBP28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 TRABD2BA6NFA1 517 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 C9orf172C9J069 976 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 ZSCAN9O15535 394 aaPredicted RBP28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 P2RX6O15547 441 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 SRPX2O60687 465 aaPredicted RBP28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 HNF4AP41235 474 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 PPP2R2AP63151 447 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 CYP4F2P78329 520 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 RTP5Q14D33 572 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 LARP7Q4G0J3 582 aaKnown RBP eCLIP28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 TCTE1Q5JU00 501 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 PWWP2BQ6NUJ5 590 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 GPRIN3Q6ZVF9 776 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 BPHLQ86WA6 291 aaPredicted RBP28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 CSNK1A1LQ8N752 337 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 PPP1R14CQ8TAE6 165 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 MDM1Q8TC05 714 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 ASPSCR1Q9BZE9 553 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 ZNF225Q9UK10 706 aa28.29■■■□□ 2.12
LIMCH1-211ENST00000509638 RBMS1P29558 406 aaKnown RBP28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 CHI3L2Q15782 390 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 HIST2H2ACQ16777 129 aaPredicted RBP28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 WASHC2DQ5SRD0 308 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 TMEM164Q5U3C3 297 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 HIST2H2AA3Q6FI13 130 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ADNP2Q6IQ32 1131 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ERMP1Q7Z2K6 904 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 SYVN1Q86TM6 617 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 TMEM126BQ8IUX1 230 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 AGAP11Q8TF27 550 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 SLC46A1Q96NT5 459 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 TEFMQ96QE5 360 aaKnown RBP28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 DRC3Q9H069 523 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 FOXJ2Q9P0K8 574 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ZFP69BQ9UJL9 534 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 PCDHGA3Q9Y5H0 932 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 AK5Q9Y6K8 562 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 SDK2Q58EX2 2172 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 UBFD1O14562 309 aaKnown RBP28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 BRINP1O60477 761 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 SCRG1O75711 98 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 NR1D1P20393 614 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 AHRP35869 848 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ERVPABLB-1P60509 514 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 SHC2P98077 582 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 GPS2Q13227 327 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 COL9A2Q14055 689 aaPredicted RBP28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 CPSF6Q16630 551 aaKnown RBP eCLIP28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 HKDC1Q2TB90 917 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 GGTA1PQ4G0N0 100 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 PRAMEF17Q5VTA0 474 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 MED27Q6P2C8 311 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 IGF2-ASQ6U949 168 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 MILR1Q7Z6M3 343 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ASPGQ86U10 573 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ZNF655Q8N720 491 aaPredicted RBP28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ZPBPQ9BS86 351 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 NT5DC2Q9H857 520 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ASCL3Q9NQ33 180 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 ZNF490Q9ULM2 529 aaPredicted RBP28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 AP1M2Q9Y6Q5 423 aa28.28■■■□□ 2.12
LIMCH1-211ENST00000509638 H3BQF6 201 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 NDUFS4O43181 175 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 NPHS1O60500 1241 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 OR4F21O95013 312 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 NEFHP12036 1026 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 RCN2Q14257 317 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 UBE2E3Q969T4 207 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 MACROD1Q9BQ69 325 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms