RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	ELP5	Q8TE02	316 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	PDCD6IP	Q8WUM4	868 aa	Known RBP	4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	KAT2A	Q92830	837 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	NT5C3B	Q969T7	300 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	ISG20	Q96AZ6	181 aa	Known RBP	4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	ARSG	Q96EG1	525 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	VCPIP1	Q96JH7	1222 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	ZNF560	Q96MR9	790 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	FMO2	Q99518	471 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	NUSAP1	Q9BXS6	441 aa	Known RBP	4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	OSBPL8	Q9BZF1	889 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	TRIM9	Q9C026	710 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	ZMYND12	Q9H0C1	365 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	TTYH1	Q9H313	450 aa	Predicted RBP	4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	R3HDML	Q9H3Y0	253 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	LRRC19	Q9H756	370 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	SAP30L	Q9HAJ7	183 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	FAM207A	Q9NSI2	230 aa	Predicted RBP	4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	ETNK2	Q9NVF9	386 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	GDE1	Q9NZC3	331 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	SMARCAL1	Q9NZC9	954 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	LARS	Q9P2J5	1176 aa	Known RBP	4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	STX18	Q9P2W9	335 aa	Known RBP	4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	TSPAN16	Q9UKR8	245 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	HBS1L	Q9Y450	684 aa	Known RBP	4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	ARAP2	Q8WZ64	1704 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	CASZ1	Q86V15	1759 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	MYH3	P11055	1940 aa		4.62	□□□□□ -1.67
RTN4-215	ENST00000491592	KIF13B	Q9NQT8	1826 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	CCDC88A	Q3V6T2	1871 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592		A0A1B0GTQ1	180 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	EDDM13	A0A1B0GTR0	161 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	C2orf92	A0A1B0GVN3	265 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592		A0A1W2PQM1	296 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	ERVV-2	B6SEH9	535 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	TEX28	O15482	410 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	ZW10	O43264	779 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	HS6ST1	O60243	411 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	TBX19	O60806	448 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	PRAMEF2	O60811	474 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	PAGE4	O60829	102 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	RPP40	O75818	363 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	PDE9A	O76083	593 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	JTB	O76095	146 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	VNN2	O95498	520 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	LGI1	O95970	557 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	NUDT3	O95989	172 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	APOA1	P02647	267 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	FGB	P02675	491 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	ASNS	P08243	561 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	H2AFZ	P0C0S5	128 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	FAM58BP	P0C7Q3	252 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	APEH	P13798	732 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	FOSL2	P15408	326 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	CKMT2	P17540	419 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	VCL	P18206	1134 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	GNAZ	P19086	355 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	BMP5	P22003	454 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	ACP1	P24666	158 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	CD1B	P29016	333 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	CDKN1B	P46527	198 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	GABRB2	P47870	512 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	ARHGDIB	P52566	201 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	SUCLG1	P53597	346 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	PTEN	P60484	403 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	B2M	P61769	119 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	GPC5	P78333	572 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	RAE1	P78406	368 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	GSTO1	P78417	241 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	FKBP3	Q00688	224 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	KLC1	Q07866	573 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	PPID	Q08752	370 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	TROAP	Q12815	778 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	SRSF5	Q13243	272 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	LARS2	Q15031	903 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	PGM5	Q15124	567 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	FAM83E	Q2M2I3	478 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	SMTNL2	Q2TAL5	461 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	SLC36A3	Q495N2	470 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	NKAIN1	Q4KMZ8	207 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	GPAT3	Q53EU6	434 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	TAF1B	Q53T94	588 aa	Predicted RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	IGSF11	Q5DX21	431 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	C10orf120	Q5SQS8	335 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	GCNT6	Q5T4J0	391 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	RNASEH2B	Q5TBB1	312 aa	Known RBP	4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	DAB2IP	Q5VWQ8	1189 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	DUPD1	Q68J44	220 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	KRT39	Q6A163	491 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	OR6B2	Q6IFH4	312 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	CCDC144NL	Q6NUI1	221 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	MSANTD2	Q6P1R3	559 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	MACC1	Q6ZN28	852 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	H2AFV	Q71UI9	128 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	GSTA5	Q7RTV2	222 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	KRT27	Q7Z3Y8	459 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	PEX26	Q7Z412	305 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	ARHGAP22	Q7Z5H3	698 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	TRABD2A	Q86V40	505 aa		4.61	□□□□□ -1.67
RTN4-215	ENST00000491592	NUDT13	Q86X67	352 aa		4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms