RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SERPING1P05155 500 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 SAGP10523 405 aaPredicted RBP2.5□□□□□ -2.01
VPS50-216ENST00000484954 MYOGP15173 224 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 DUTP33316 252 aaKnown RBP2.5□□□□□ -2.01
VPS50-216ENST00000484954 NNMTP40261 264 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 ASCL1P50553 236 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 ATP4BP51164 291 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 TRA2BP62995 288 aaKnown RBP2.5□□□□□ -2.01
VPS50-216ENST00000484954 ACSM1Q08AH1 577 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 RALGDSQ12967 914 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 SGCGQ13326 291 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 SNTB1Q13884 538 aaKnown RBP2.5□□□□□ -2.01
VPS50-216ENST00000484954 PTPRCAPQ14761 206 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 OPCMLQ14982 345 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 ZNF146Q15072 292 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 MS4A18Q3C1V0 323 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 ALDH1L2Q3SY69 923 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 SPATA1Q5VX52 437 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 CYB5D1Q6P9G0 228 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 CTR9Q6PD62 1173 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 C3P1Q6ZMU1 363 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 CDHR3Q6ZTQ4 885 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 GPC2Q8N158 579 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 NDNQ99608 321 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 CDCA3Q99618 268 aaPredicted RBP2.5□□□□□ -2.01
VPS50-216ENST00000484954 CCDC68Q9H2F9 335 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 RAVER2Q9HCJ3 691 aaKnown RBP2.5□□□□□ -2.01
VPS50-216ENST00000484954 GSN-AS1Q9NRJ2 163 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 NSMCE4AQ9NXX6 385 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 ZNF107Q9UII5 783 aaPredicted RBP2.5□□□□□ -2.01
VPS50-216ENST00000484954 SELENOKQ9Y6D0 94 aa2.5□□□□□ -2.01
VPS50-216ENST00000484954 NEDD4P46934 1319 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 TRAV24A0A0B4J272 114 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 ZNF840PA6NDX5 716 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 OR52Z1P0C646 297 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 F3P13726 295 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 EDNRAP25101 427 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 PCGF2P35227 344 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 KHKP50053 298 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 ALCAMQ13740 583 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 SUSD4Q5VX71 490 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 REG3GQ6UW15 175 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 CPEB2Q7Z5Q1 589 aaKnown RBP2.49□□□□□ -2.01
VPS50-216ENST00000484954 MARCH9Q86YJ5 346 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 RCOR2Q8IZ40 523 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 TCEANCQ8N8B7 351 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 RTL3Q8N8U3 475 aaKnown RBP2.49□□□□□ -2.01
VPS50-216ENST00000484954 AVL9Q8NBF6 648 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 SUMF1Q8NBK3 374 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 OR52B6Q8NGF0 335 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 OR10G7Q8NGN6 311 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 TSACCQ96A04 125 aaPredicted RBP2.49□□□□□ -2.01
VPS50-216ENST00000484954 HACD3Q9P035 362 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 FER1L5A0AVI2 2057 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 RALGAPA1Q6GYQ0 2036 aa2.49□□□□□ -2.01
VPS50-216ENST00000484954 TCRBV21S2A2A0A5A6 115 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 KLLNB2CW77 178 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 CLDN4O14493 209 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 SH3BP5O60239 455 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 GPRIN2O60269 458 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 CYTIPO60759 359 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 ZNF354AO60765 605 aaPredicted RBP2.48□□□□□ -2.01
VPS50-216ENST00000484954 SAP30O75446 220 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 RPS6KA5O75582 802 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 PRDM1O75626 825 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 AADACP22760 399 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 NDUFV3P56181 108 aaKnown RBP2.48□□□□□ -2.01
VPS50-216ENST00000484954 FKBP3Q00688 224 aaKnown RBP2.48□□□□□ -2.01
VPS50-216ENST00000484954 BECN1Q14457 450 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 DUSP5Q16690 384 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 LACTB2Q53H82 288 aaPredicted RBP2.48□□□□□ -2.01
VPS50-216ENST00000484954 DET1Q7L5Y6 550 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 C5orf24Q7Z6I8 188 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 IQCHQ86VS3 1027 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 OR4N5Q8IXE1 308 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 PHC2Q8IXK0 858 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.48□□□□□ -2.01
VPS50-216ENST00000484954 BTBD9Q96Q07 612 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 PIH1D3Q9NQM4 214 aaKnown RBP2.48□□□□□ -2.01
VPS50-216ENST00000484954 ABCB10Q9NRK6 738 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 PHPT1Q9NRX4 125 aaPredicted RBP2.48□□□□□ -2.01
VPS50-216ENST00000484954 TBC1D13Q9NVG8 400 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 GTSE1Q9NYZ3 720 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 NLGN3Q9NZ94 848 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 TBC1D7Q9P0N9 293 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 TXNDC16Q9P2K2 825 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 HEG1Q9ULI3 1381 aa2.48□□□□□ -2.01
VPS50-216ENST00000484954 A0A087WWV3 80 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 A0A087WZ39 114 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 TRBC2A0A5B9 178 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 C17orf105B2RV13 164 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 SLC1A7O00341 560 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 HPP00738 406 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 NR2F1P10589 423 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 PCP11498 1178 aaKnown RBP2.47□□□□□ -2.01
VPS50-216ENST00000484954 CD59P13987 128 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 LMAN1P49257 510 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 PRELPP51888 382 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 NDST2P52849 883 aa2.47□□□□□ -2.01
VPS50-216ENST00000484954 LIMK1P53667 647 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms