RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TFR2Q9UP52 801 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 ABCA4P78363 2273 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 CD3EAPO15446 510 aaKnown RBP16.17■□□□□ 0.18
VIM-204ENST00000478746 P2RX6O15547 441 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 CCNDBP1O95273 360 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 MATN4O95460 622 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 PTMAP06454 111 aaKnown RBP16.17■□□□□ 0.18
VIM-204ENST00000478746 TPOP07202 933 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 ERGP11308 486 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 KLK2P20151 261 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 CHRNB4P30926 498 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 PTGER1P34995 402 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 XCR1P46094 333 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 GDF10P55107 478 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 TAS2R50P59544 299 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 ICE2Q659A1 982 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 ADCK2Q7Z695 626 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 VSTM4Q8IW00 320 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 CPSF7Q8N684 471 aaKnown RBP16.17■□□□□ 0.18
VIM-204ENST00000478746 CXXC4Q9H2H0 198 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 MARCH4Q9P2E8 410 aaPredicted RBP16.17■□□□□ 0.18
VIM-204ENST00000478746 TAC3Q9UHF0 121 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 RNF6Q9Y252 685 aa16.17■□□□□ 0.18
VIM-204ENST00000478746 A0A1B0GTH9 108 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 GOLGA6L9A6NEM1 432 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 FAM90A27PA6NNH2 459 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 ERI2A8K979 691 aaKnown RBP16.16■□□□□ 0.18
VIM-204ENST00000478746 CDK2AP1O14519 115 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 NDC80O14777 642 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 NDUFS3O75489 264 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 SLC25A12O75746 678 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 TOXO94900 526 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 NSA2O95478 260 aaKnown RBP16.16■□□□□ 0.18
VIM-204ENST00000478746 HOXD4P09016 255 aaPredicted RBP16.16■□□□□ 0.18
VIM-204ENST00000478746 MSX1P28360 303 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 SNRPNP63162 240 aaKnown RBP16.16■□□□□ 0.18
VIM-204ENST00000478746 TFF3Q07654 80 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 ARHGAP19Q14CB8 494 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 SFT2D3Q587I9 215 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 PAPD4Q6PIY7 484 aaKnown RBP16.16■□□□□ 0.18
VIM-204ENST00000478746 CD163Q86VB7 1156 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 RPS19BP1Q86WX3 136 aaKnown RBP16.16■□□□□ 0.18
VIM-204ENST00000478746 LRRC6Q86X45 466 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 SHISA5Q8N114 240 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 MARVELD2Q8N4S9 558 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 RND1Q92730 232 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 LPAR4Q99677 370 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 CCM2LQ9NUG4 571 aaPredicted RBP16.16■□□□□ 0.18
VIM-204ENST00000478746 HCN3Q9P1Z3 774 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 TCAF1Q9Y4C2 921 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 PCDHA13Q9Y5I0 950 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 HRH3Q9Y5N1 445 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 SCN3AQ9NY46 2000 aa16.16■□□□□ 0.18
VIM-204ENST00000478746 ZNF469Q96JG9 3925 aaPredicted RBP16.15■□□□□ 0.18
VIM-204ENST00000478746 USP27XA6NNY8 438 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 HAT1O14929 419 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 NME2P1O60361 137 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 ZWINTO95229 277 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 STATHP02808 62 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 DRD2P14416 443 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 NME2P22392 152 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 HSD17B2P37059 387 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 GRIA1P42261 906 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 FOLH1Q04609 750 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 MYBPHQ13203 477 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 NSDHLQ15738 373 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 ZNF468Q5VIY5 522 aaPredicted RBP16.15■□□□□ 0.18
VIM-204ENST00000478746 PRSS41Q7RTY9 318 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 PLD3Q8IV08 490 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 LGI4Q8N135 537 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 PEX13Q92968 403 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 EBNA1BP2Q99848 306 aaKnown RBP16.15■□□□□ 0.18
VIM-204ENST00000478746 ETNK1Q9HBU6 452 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 SLC24A3Q9HC58 644 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 ABCF3Q9NUQ8 709 aa16.15■□□□□ 0.18
VIM-204ENST00000478746 AKAP6Q13023 2319 aa16.14■□□□□ 0.18
VIM-204ENST00000478746 ZNF839A8K0R7 811 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 ARHGEF33A8MVX0 844 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 MYO1CO00159 1063 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 TFECO14948 347 aaPredicted RBP16.14■□□□□ 0.17
VIM-204ENST00000478746 RPS3P23396 243 aaKnown RBP eCLIP16.14■□□□□ 0.171e-43■□□□□ 10.4
VIM-204ENST00000478746 BCL6P41182 706 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 CYB561P49447 251 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 PNLIPRP1P54315 467 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 EIF3BP55884 814 aaKnown RBP16.14■□□□□ 0.17
VIM-204ENST00000478746 ABATP80404 500 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 USP10Q14694 798 aaKnown RBP16.14■□□□□ 0.17
VIM-204ENST00000478746 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.14■□□□□ 0.17
VIM-204ENST00000478746 CNGA4Q8IV77 575 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 POGLUT1Q8NBL1 392 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 PLPP5Q8NEB5 264 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 ALG3Q92685 438 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 NINJ1Q92982 152 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 TMEM125Q96AQ2 219 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 PKP4Q99569 1192 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 GSX1Q9H4S2 264 aaPredicted RBP16.14■□□□□ 0.17
VIM-204ENST00000478746 CHRAC1Q9NRG0 131 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 FAM114A2Q9NRY5 505 aa16.14■□□□□ 0.17
VIM-204ENST00000478746 E7EVH7 732 aa16.13■□□□□ 0.17
VIM-204ENST00000478746 H7BY64 318 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms