RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PEBP4Q96S96 227 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 FAM173AQ9BQD7 235 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 C12orf65Q9H3J6 166 aaKnown RBP7.48□□□□□ -1.21
USP54-211ENST00000474929 ACBD3Q9H3P7 528 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 IL1RL2Q9HB29 575 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 PARVAQ9NVD7 372 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 ETNK2Q9NVF9 386 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 CRLS1Q9UJA2 301 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 METRNQ9UJH8 293 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 MRFAP1Q9Y605 127 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 A0A0A6YYJ9 748 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 A0A0J9YVX5 310 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 GRID2IPA4D2P6 1211 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 F8W8V4 182 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 SLCO1B7G3V0H7 640 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 GPR39O43194 453 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 MFSD11O43934 449 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 CTSVO60911 334 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 GLSO94925 669 aaPredicted RBP7.47□□□□□ -1.21
USP54-211ENST00000474929 MED26O95402 600 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 F13A1P00488 732 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 CD9P21926 228 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 PRKCIP41743 596 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 GRIA3P42263 894 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 ZNF136P52737 540 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 NR1H2P55055 460 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 ADARP55265 1226 aaKnown RBP7.47□□□□□ -1.21
USP54-211ENST00000474929 SLC10A1Q14973 349 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 PCSK7Q16549 785 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 CLEC16AQ2KHT3 1053 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 TMEM249Q2WGJ8 235 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 ACSF3Q4G176 576 aaPredicted RBP7.47□□□□□ -1.21
USP54-211ENST00000474929 SYTL3Q4VX76 610 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 DNAJC21Q5F1R6 531 aaKnown RBP7.47□□□□□ -1.21
USP54-211ENST00000474929 CCDC183Q5T5S1 534 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 FRMPD2BQ6IN97 320 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 SCIMPQ6UWF3 145 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 KIAA0408Q6ZU52 694 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 HSCBQ8IWL3 235 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 PLD6Q8N2A8 252 aaKnown RBP7.47□□□□□ -1.21
USP54-211ENST00000474929 DTWD1Q8N5C7 304 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 CSNK1A1LQ8N752 337 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 OR2L8Q8NGY9 312 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 RERGQ96A58 199 aaPredicted RBP7.47□□□□□ -1.21
USP54-211ENST00000474929 IMP4Q96G21 291 aaKnown RBP7.47□□□□□ -1.21
USP54-211ENST00000474929 TEKT5Q96M29 485 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 FICDQ9BVA6 458 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 SFXN3Q9BWM7 321 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 ANGPTL4Q9BY76 406 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 STK33Q9BYT3 514 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 DEFB126Q9BYW3 111 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 PIGMQ9H3S5 423 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 L2HGDHQ9H9P8 463 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 GALNT8Q9NY28 637 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 C6orf203Q9P0P8 240 aaPredicted RBP7.47□□□□□ -1.21
USP54-211ENST00000474929 KCNS2Q9ULS6 477 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 CTNND2Q9UQB3 1225 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 ERVK-11Q9UQG0 969 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 KLHL20Q9Y2M5 609 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 LIPGQ9Y5X9 500 aa7.47□□□□□ -1.21
USP54-211ENST00000474929 TENM1Q9UKZ4 2725 aa7.46□□□□□ -1.21
USP54-211ENST00000474929 FREM1Q5H8C1 2179 aa7.46□□□□□ -1.21
USP54-211ENST00000474929 A8MVJ9 347 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 ARHGEF33A8MVX0 844 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 MAGEB17A8MXT2 336 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 DEFB108AA8MXU0 73 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 C3orf80F5H4A9 247 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 FFAR3O14843 346 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 AURKAO14965 403 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 STX7O15400 261 aaKnown RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 GPR42O15529 346 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 SGTAO43765 313 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 LMX1BO60663 402 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 SRP72O76094 671 aaKnown RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 MATN4O95460 622 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 FTH1P02794 183 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 ZSCAN22P10073 491 aaPredicted RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 PKMP14618 531 aaKnown RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 UCHL3P15374 230 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 ITGALP20701 1170 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 PDHA2P29803 388 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 MAGEA5P43359 124 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 ACTG1P63261 375 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 IFI35P80217 286 aaPredicted RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 OGDHQ02218 1023 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 ABRAXAS2Q15018 415 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 PAFAH1B3Q15102 231 aaKnown RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 NSDHLQ15738 373 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 ZNF658BQ4V348 819 aaPredicted RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 NSUN5P2Q63ZY6 315 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 POMZP3Q6PJE2 187 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 SEM1Q6ZVN7 128 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 CYP4V2Q6ZWL3 525 aaPredicted RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 DCUN1D3Q8IWE4 304 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 ZNF611Q8N823 705 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 LMNTD1Q8N9Z9 388 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 TNIP2Q8NFZ5 429 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 UCN3Q969E3 161 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 OR1F2PQ96R84 312 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 NRTNQ99748 197 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms