RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 TNFP01375 233 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 IFNB1P01574 187 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 FGF1P05230 155 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 HLA-DQB2P05538 268 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 IGHV4-34P06331 123 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 RALBP11234 206 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 CEACAM1P13688 526 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 SLC2A4P14672 509 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 TCP1P17987 556 aaKnown RBP6.13□□□□□ -1.43
PTCD3-208ENST00000469585 VCLP18206 1134 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 PTPN3P26045 913 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 HNF1BP35680 557 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 FDFT1P37268 417 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 MMP12P39900 470 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 POLE2P56282 527 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 PPARDQ03181 441 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 CSHL1Q14406 222 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 LRRC73Q5JTD7 316 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 SEL1L3Q68CR1 1132 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 TCEAL6Q6IPX3 200 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 CCDC144NLQ6NUI1 221 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 JMJD6Q6NYC1 403 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-208ENST00000469585 Q6ZSR6 202 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 SLC29A4Q7RTT9 530 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 KDELC2Q7Z4H8 507 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 GLT6D1Q7Z4J2 308 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 GKN2Q86XP6 184 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 ANKRD42Q8N9B4 389 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 LRRC57Q8N9N7 239 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 DNAAF3Q8N9W5 541 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 IPMKQ8NFU5 416 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 GDAP1Q8TB36 358 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 CCT6BQ92526 530 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 TCEAL3Q969E4 200 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 SCRN2Q96FV2 425 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 PRR11Q96HE9 360 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-208ENST00000469585 HES6Q96HZ4 224 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 RUNDC3BQ96NL0 473 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 OLFM3Q96PB7 478 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 MACROD1Q9BQ69 325 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 TDRD1Q9BXT4 1180 aaKnown RBP6.13□□□□□ -1.43
PTCD3-208ENST00000469585 ABCG4Q9H172 646 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 MYLK2Q9H1R3 596 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 GBA3Q9H227 469 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 PRDM13Q9H4Q3 707 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 LRRC40Q9H9A6 602 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 SAP30LQ9HAJ7 183 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 CD93Q9NPY3 652 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 ASB6Q9NWX5 421 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 TRMT1Q9NXH9 659 aaKnown RBP6.13□□□□□ -1.43
PTCD3-208ENST00000469585 PAK5Q9P286 719 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 TRIM10Q9UDY6 481 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 PACSIN2Q9UNF0 486 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-208ENST00000469585 TFR2Q9UP52 801 aa6.13□□□□□ -1.43
PTCD3-208ENST00000469585 NYNRINQ9P2P1 1898 aaKnown RBP6.13□□□□□ -1.43
PTCD3-208ENST00000469585 A0A0J9YYE9 177 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 FAM90A18PA6NE21 464 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 FAM90A16PA6NEW6 464 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 FAM90A9PA6NNJ1 464 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 FAM90A5PA8MXJ8 464 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 ANKRD66B4E2M5 251 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 STX7O15400 261 aaKnown RBP6.12□□□□□ -1.43
PTCD3-208ENST00000469585 ZNF821O75541 412 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-208ENST00000469585 RECQL5O94762 991 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-208ENST00000469585 LDOC1O95751 146 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-208ENST00000469585 CD160O95971 181 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 EPOP01588 193 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 TRBC1P01850 177 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 FGGP02679 453 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 MBPP02686 304 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-208ENST00000469585 HNRNPCP07910 306 aaKnown RBP eCLIP6.12□□□□□ -1.432e-6■□□□□ 11.2
PTCD3-208ENST00000469585 FAM90A15PP0C7V4 464 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 FAM90A14PP0C7W9 464 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 CTPS1P17812 591 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 CSRP1P21291 193 aaKnown RBP6.12□□□□□ -1.43
PTCD3-208ENST00000469585 HADHAP40939 763 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 GSTM5P46439 218 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 GNG11P61952 73 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 CCZ1BP86790 482 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 CCZ1P86791 482 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-208ENST00000469585 ILF3Q12906 894 aaKnown RBP eCLIP6.12□□□□□ -1.437e-7■■■■□ 23.9
PTCD3-208ENST00000469585 ITGA9Q13797 1035 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 PPP1R7Q15435 360 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 PARP6Q2NL67 630 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 KIF19Q2TAC6 998 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 ANKRD20A2Q5SQ80 823 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 ANKRD20A1Q5TYW2 823 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 ANKRD20A3Q5VUR7 823 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 LRRC66Q68CR7 880 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 KIRREL2Q6UWL6 708 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 ENPP7Q6UWV6 458 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 NAPRTQ6XQN6 538 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 MACC1Q6ZN28 852 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 RD3Q7Z3Z2 195 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 P3H2Q8IVL5 708 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 NAXDQ8IW45 347 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 AVL9Q8NBF6 648 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 BLOC1S5Q8TDH9 187 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 CEP192Q8TEP8 1941 aa6.12□□□□□ -1.43
PTCD3-208ENST00000469585 SHROOM3Q8TF72 1996 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms