RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, human

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-208	ENST00000443046	HAT1	O14929	419 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	CD3EAP	O15446	510 aa	Known RBP	13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	NME2P1	O60361	137 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	FAM155B	O75949	473 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	TPM1	P09493	284 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	ZNF24	P17028	368 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	NME2	P22392	152 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	MSX1	P28360	303 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	PTGER1	P34995	402 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	RPA3	P35244	121 aa	Predicted RBP	13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	AVPR1B	P47901	424 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	AGTR2	P50052	363 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	IST1	P53990	364 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	PRAME	P78395	509 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	TBX2	Q13207	712 aa	Predicted RBP	13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	CTSL3P	Q5NE16	218 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	ZNF468	Q5VIY5	522 aa	Predicted RBP	13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	PRSS41	Q7RTY9	318 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	TAB3	Q8N5C8	712 aa	Predicted RBP	13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	ASB5	Q8WWX0	329 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	BIRC8	Q96P09	236 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	UTP6	Q9NYH9	597 aa	Known RBP	13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	LRFN1	Q9P244	771 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	KCNN3	Q9UGI6	736 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	TAC3	Q9UHF0	121 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	PCYOX1	Q9UHG3	505 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	ANAPC5	Q9UJX4	755 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	PCDHA13	Q9Y5I0	950 aa		13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	PHF3	Q92576	2039 aa	Known RBP	13.55	□□□□□ -0.24
HMGN1-208	ENST00000443046	KCNE1B	A0A087WTH5	132 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	CBFA2T2	O43439	604 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	PSIP1	O75475	530 aa	Known RBP	13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	GAS8	O95995	478 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	HOXD4	P09016	255 aa	Predicted RBP	13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	XCR1	P46094	333 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	ABAT	P80404	500 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	NDUFA9	Q16795	377 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	MINDY4	Q4G0A6	757 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	VN1R4	Q7Z5H5	301 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	CNGA4	Q8IV77	575 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	LRRC56	Q8IYG6	542 aa	Predicted RBP	13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	MPP5	Q8N3R9	675 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	CPSF7	Q8N684	471 aa	Known RBP	13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	SLC5A8	Q8N695	610 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	PLPP5	Q8NEB5	264 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	OR51Q1	Q8NH59	317 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	ELP5	Q8TE02	316 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	NRGN	Q92686	78 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	CALR3	Q96L12	384 aa	Known RBP	13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	PKP4	Q99569	1192 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	ETNK1	Q9HBU6	452 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	CHRAC1	Q9NRG0	131 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	TREX1	Q9NSU2	369 aa		13.54	□□□□□ -0.24
HMGN1-208	ENST00000443046	NKX2-6	A6NCS4	301 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046		E7ENX8	843 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	SLC25A12	O75746	678 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	CCNDBP1	O95273	360 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	CHRNB4	P30926	498 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	PTGS2	P35354	604 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	HSD17B2	P37059	387 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	BCL6	P41182	706 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	CETN2	P41208	172 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	PNLIPRP1	P54315	467 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	RHAG	Q02094	409 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	OC90	Q02509	493 aa	Predicted RBP	13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	TAP2	Q03519	686 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	USP10	Q14694	798 aa	Known RBP	13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	MAPKAPK3	Q16644	382 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	SFT2D3	Q587I9	215 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	PAPD4	Q6PIY7	484 aa	Known RBP	13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	PLD3	Q8IV08	490 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	ZNF480	Q8WV37	535 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	NINJ1	Q92982	152 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	UCK2	Q9BZX2	261 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	DLL4	Q9NR61	685 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	PLSCR2	Q9NRY7	297 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	RNF6	Q9Y252	685 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	DNAJC13	O75165	2243 aa		13.53	□□□□□ -0.24
HMGN1-208	ENST00000443046	ZNF407	Q9C0G0	2248 aa		13.52	□□□□□ -0.24
HMGN1-208	ENST00000443046		A0A1B0GTH9	108 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046		A0A1B0GTL3	188 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	GOLGA6L9	A6NEM1	432 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	SLC16A8	O95907	504 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	KLK2	P20151	261 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	TPP2	P29144	1249 aa	Predicted RBP	13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	TRHR	P34981	398 aa	Predicted RBP	13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	SLC26A5	P58743	744 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	MFSD4B	Q5TF39	518 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	CES4A	Q5XG92	561 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	TMEM211	Q6ICI0	200 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	TMEM214	Q6NUQ4	689 aa	Known RBP	13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	PPP1R21	Q6ZMI0	780 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	CEP128	Q6ZU80	1094 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	CD163	Q86VB7	1156 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	RPS19BP1	Q86WX3	136 aa	Known RBP	13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	PDSS2	Q86YH6	399 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	ARMC10	Q8N2F6	343 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	LRRC57	Q8N9N7	239 aa		13.52	□□□□□ -0.25
HMGN1-208	ENST00000443046	POGLUT1	Q8NBL1	392 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms