RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MTFMTQ96DP5 389 aaKnown RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 CCDC74BQ96LY2 380 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 SERPINI1Q99574 410 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 KLHL25Q9H0H3 589 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 BRF2Q9HAW0 419 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 SLC6A20Q9NP91 592 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ZFP69BQ9UJL9 534 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 LAMA1P25391 3075 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 KCNE1BA0A087WTH5 132 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 IGHV5-10-1A0A0J9YXX1 117 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 A0A1W2PQM1 296 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 FEZF1A0PJY2 475 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ARHGAP10A1A4S6 786 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 OR2A25A4D2G3 310 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 FOXE1O00358 373 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 HAT1O14929 419 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 HDAC3O15379 428 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 NDUFS4O43181 175 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 EDF1O60869 148 aaKnown RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 CLEC3AO75596 197 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 FTH1P19P0C7X4 201 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 THRAP10827 490 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 PVRP15151 417 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 NELFEP18615 380 aaKnown RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 GYS2P54840 703 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 OCRLQ01968 901 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 FOXM1Q08050 763 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 CYP4F3Q08477 520 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 MAD2L1Q13257 205 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 EIF3IQ13347 325 aaKnown RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 PWP1Q13610 501 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ZXDCQ2QGD7 858 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 TMEM164Q5U3C3 297 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ZNF425Q6IV72 752 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 LETMD1Q6P1Q0 360 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ABHD13Q7L211 337 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 PAGE2Q7Z2X7 111 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ASPGQ86U10 573 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 PAQR7Q86WK9 346 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 FAM20CQ8IXL6 584 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 LAS2Q8IYD9 372 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 OR7G3Q8NG95 312 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 OR6Y1Q8NGX8 325 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 TWIST2Q8WVJ9 160 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 KLHL6Q8WZ60 621 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 MOCOSQ96EN8 888 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 QRFPRQ96P65 431 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 NRTNQ99748 197 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ROGDIQ9GZN7 287 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 COPS7BQ9H9Q2 264 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 MRGBPQ9NV56 204 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 MARCOQ9UEW3 520 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 ZDHHC2Q9UIJ5 367 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 RARRES3Q9UL19 164 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 CLCA2Q9UQC9 943 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 BTRCQ9Y297 605 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 KLHL20Q9Y2M5 609 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 TSC22D4Q9Y3Q8 395 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 TIMM22Q9Y584 194 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 AP1M2Q9Y6Q5 423 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 IGHV5-51A0A0C4DH38 117 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 SRRM3A6NNA2 597 aaPredicted RBP9.67□□□□□ -0.86
CD44-207ENST00000425428 MANBAO00462 879 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 KIF1CO43896 1103 aaKnown RBP9.67□□□□□ -0.86
CD44-207ENST00000425428 SKAP2O75563 359 aaPredicted RBP9.67□□□□□ -0.86
CD44-207ENST00000425428 MT-CO3P00414 261 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 HBQ1P09105 142 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 JMJD7P0C870 316 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 HOXB3P14651 431 aaPredicted RBP9.67□□□□□ -0.86
CD44-207ENST00000425428 PCSK2P16519 638 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 MAPK1P28482 360 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 CCKBRP32239 447 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 CSF2RBP32927 897 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 SCTRP47872 440 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 ITGA1P56199 1179 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 VSX2P58304 361 aaPredicted RBP9.67□□□□□ -0.86
CD44-207ENST00000425428 PPP1CAP62136 330 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 GRM7Q14831 915 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 PDCD2Q16342 344 aaPredicted RBP9.67□□□□□ -0.86
CD44-207ENST00000425428 FAM214AQ32MH5 1076 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 ATP6AP1LQ52LC2 224 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 TMEM35AQ53FP2 167 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 KANK2Q63ZY3 851 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 NXNQ6DKJ4 435 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 CLEC6AQ6EIG7 209 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 TRIM40Q6P9F5 258 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 RNF44Q7L0R7 432 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 MCATQ8IVS2 390 aaKnown RBP9.67□□□□□ -0.86
CD44-207ENST00000425428 PARP9Q8IXQ6 854 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 LSMEM2Q8N112 164 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 D2HGDHQ8N465 521 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 HUS1BQ8NHY5 278 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 FLVCR1-AS1Q8TAF5 88 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 C19orf60Q96EN9 201 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 PPP3R2Q96LZ3 170 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 RILPQ96NA2 401 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 MTERF1Q99551 399 aaKnown RBP9.67□□□□□ -0.86
CD44-207ENST00000425428 SARGQ9BW04 601 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 FAM107BQ9H098 131 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 RHBGQ9H310 441 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms