RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 AJAP1Q9UKB5 411 aaPredicted RBP11.52□□□□□ -0.56
SYNPO-202ENST00000394243 ZFR2Q9UPR6 939 aaKnown RBP11.52□□□□□ -0.56
SYNPO-202ENST00000394243 PROM1O43490 865 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 PTTG1O95997 202 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 UNGP13051 313 aaPredicted RBP11.52□□□□□ -0.56
SYNPO-202ENST00000394243 CHRNA4P43681 627 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 GLUD2P49448 558 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 TSPAN33Q86UF1 283 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 GPR151Q8TDV0 419 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 BTBD1Q9H0C5 482 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 ABCG5Q9H222 651 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 RHCGQ9UBD6 479 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 PCDHB3Q9Y5E6 796 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 TEX264Q9Y6I9 313 aa11.52□□□□□ -0.56
SYNPO-202ENST00000394243 FAM170BA6NMN3 283 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 C2orf74A8MZ97 194 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 SOCS2O14508 198 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 GJA1P17302 382 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 ITGB5P18084 799 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 NCS1P62166 190 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 TTTY10Q9BZA0 68 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 GALPQ9UBC7 116 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 NLKQ9UBE8 527 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 DPP7Q9UHL4 492 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 CNTNAP1P78357 1384 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 G6PDP11413 515 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 HTR1BP28222 390 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 OPRL1P41146 370 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 PCBP2Q15366 365 aaKnown RBP eCLIP11.52□□□□□ -0.57
SYNPO-202ENST00000394243 CDCA2Q69YH5 1023 aaPredicted RBP11.52□□□□□ -0.57
SYNPO-202ENST00000394243 SLC35B2Q8TB61 432 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 THEM6Q8WUY1 208 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 CORO1BQ9BR76 489 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 CCDC32Q9BV29 185 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 ABHD16BQ9H3Z7 469 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 VPS29Q9UBQ0 182 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 DEPDC5O75140 1603 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 BORCS7-ASMTA0A0B4J1R7 106 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 E7EQ34 232 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 PCDH17O14917 1159 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 PAK4O96013 591 aaPredicted RBP11.52□□□□□ -0.57
SYNPO-202ENST00000394243 CELP19835 753 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 BEX3Q00994 111 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 GPRC6AQ5T6X5 926 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 PNCKQ6P2M8 343 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 BEST3Q8N1M1 668 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 FTMTQ8N4E7 242 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 BEND7Q8N7W2 519 aaPredicted RBP11.52□□□□□ -0.57
SYNPO-202ENST00000394243 ZCCHC10Q8TBK6 192 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 PMEPA1Q969W9 287 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 CPNE5Q9HCH3 593 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 SIX2Q9NPC8 291 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 NRCAMQ92823 1304 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 ZC3H13Q5T200 1668 aaKnown RBP11.52□□□□□ -0.57
SYNPO-202ENST00000394243 SCAMP1O15126 338 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 L1CAMP32004 1257 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 GAD2Q05329 585 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 NUP54Q7Z3B4 507 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 ESX1Q8N693 406 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 OR10T2Q8NGX3 314 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 GOLGA2P5Q9HBQ8 144 aa11.52□□□□□ -0.57
SYNPO-202ENST00000394243 ZCCHC3Q9NUD5 404 aaKnown RBP11.52□□□□□ -0.57
SYNPO-202ENST00000394243 MRPL15Q9P015 296 aaKnown RBP11.52□□□□□ -0.57
SYNPO-202ENST00000394243 EXOSC1Q9Y3B2 195 aaKnown RBP11.52□□□□□ -0.57
SYNPO-202ENST00000394243 ITSN1Q15811 1721 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF670-ZNF695F2Z2N8 137 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 MT-ND2P03891 347 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 MT-ND5P03915 603 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 HLCSP50747 726 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 CLCN7P51798 805 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 MLLT10P55197 1068 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 CDK6Q00534 326 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 NTRK2Q16620 822 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 SPATS1Q496A3 300 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 OR14K1Q8NGZ2 314 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 LMLNQ96KR4 655 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 ACTR6Q9GZN1 396 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 TUBG2Q9NRH3 451 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 CCND3P30281 292 aaPredicted RBP11.51□□□□□ -0.57
SYNPO-202ENST00000394243 TAF1AQ15573 450 aaPredicted RBP11.51□□□□□ -0.57
SYNPO-202ENST00000394243 GPR68Q15743 365 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 WASH2PQ6VEQ5 465 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 PSMG2Q969U7 264 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 PYCR2Q96C36 320 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 COQ10AQ96MF6 247 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 COPZ2Q9P299 210 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 GLS2Q9UI32 602 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 BHMG1C9JSJ3 638 aaPredicted RBP11.51□□□□□ -0.57
SYNPO-202ENST00000394243 CREBL2O60519 120 aaPredicted RBP11.51□□□□□ -0.57
SYNPO-202ENST00000394243 NIPSNAP2O75323 286 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 PAHP00439 452 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 TGFB1P01137 390 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 VIPP01282 170 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 PBX3P40426 434 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 GRIA2P42262 883 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 NOXA1Q86UR1 476 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 OR8K3Q8NH51 312 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 HIST1H2AAQ96QV6 131 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 OR5B12Q96R08 314 aa11.51□□□□□ -0.57
SYNPO-202ENST00000394243 P2RX7Q99572 595 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms