RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 ZNF763Q0D2J5 394 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 IER5LQ5T953 404 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 DENND5AQ6IQ26 1287 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 NEK10Q6ZWH5 1172 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 CLIP4Q8N3C7 705 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 MUS81Q96NY9 551 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 SLC38A3Q99624 504 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 TOR3AQ9H497 397 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 MARCH5Q9NX47 278 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 PTTG2Q9NZH5 202 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 UTS2RQ9UKP6 389 aa12.78□□□□□ -0.36
NPHP4-203ENST00000378169 TFECO14948 347 aaPredicted RBP12.77□□□□□ -0.36
NPHP4-203ENST00000378169 TSC22D2O75157 780 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 STX11O75558 287 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 KAT7O95251 611 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 CA3P07451 260 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 DNAJA1P31689 397 aaKnown RBP12.77□□□□□ -0.36
NPHP4-203ENST00000378169 AKT2P31751 481 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 MPIP34949 423 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 CRISP3P54108 245 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 CARTPTQ16568 116 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 CLEC12AQ5QGZ9 265 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 KLHDC10Q6PID8 442 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 MZB1Q8WU39 189 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 JPH3Q8WXH2 748 aaPredicted RBP12.77□□□□□ -0.36
NPHP4-203ENST00000378169 DEPDC7Q96QD5 511 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 RPF2Q9H7B2 306 aaKnown RBP12.77□□□□□ -0.36
NPHP4-203ENST00000378169 ZNF334Q9HCZ1 680 aaPredicted RBP12.77□□□□□ -0.36
NPHP4-203ENST00000378169 IGLON5A6NGN9 336 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 AP2A2O94973 939 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 GSRP00390 522 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 PSMA1P25786 263 aaKnown RBP12.77□□□□□ -0.36
NPHP4-203ENST00000378169 TBPL1P62380 186 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 UAP1L1Q3KQV9 507 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 PAGE3Q5JUK9 113 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 IQCHQ86VS3 1027 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 RNF130Q86XS8 419 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 TRAM1L1Q8N609 369 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 COX18Q8N8Q8 333 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 TSPEARQ8WU66 669 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 HERC2P3Q9BVR0 1158 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 THUMPD1Q9NXG2 353 aaKnown RBP12.77□□□□□ -0.36
NPHP4-203ENST00000378169 ZNF451Q9Y4E5 1061 aa12.77□□□□□ -0.36
NPHP4-203ENST00000378169 FAM47E-STBD1D6RA91 191 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 ASNA1O43681 348 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 MATN4O95460 622 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 C6P13671 934 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 PTNP21246 168 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 AZGP1P25311 298 aaKnown RBP12.77□□□□□ -0.37
NPHP4-203ENST00000378169 ZNF140P52738 457 aaPredicted RBP12.77□□□□□ -0.37
NPHP4-203ENST00000378169 BTN3A2P78410 334 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 SP140Q13342 867 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 NFE2L1Q14494 772 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 GPR68Q15743 365 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 NPTX1Q15818 432 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.77□□□□□ -0.376e-10■■■■■ 48.2
NPHP4-203ENST00000378169 CWF19L1Q69YN2 538 aaKnown RBP12.77□□□□□ -0.37
NPHP4-203ENST00000378169 PACRGLQ8N7B6 248 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 FAM98AQ8NCA5 519 aaKnown RBP12.77□□□□□ -0.37
NPHP4-203ENST00000378169 RASSF5Q8WWW0 418 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 ZUFSPQ96AP4 578 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 GAL3ST4Q96RP7 486 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 MARCH7Q9H992 704 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 ABCB9Q9NP78 766 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 CCM2LQ9NUG4 571 aaPredicted RBP12.77□□□□□ -0.37
NPHP4-203ENST00000378169 CLDN4O14493 209 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 CASKO14936 926 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 KMOO15229 486 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 LATS1O95835 1130 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 ADRA1AP35348 466 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 SGSHP51688 502 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 LBX1P52954 281 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 ITPRIPL2Q3MIP1 535 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 CRB2Q5IJ48 1285 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 CEP78Q5JTW2 689 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 HMGN2P46Q86SG4 172 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 OXR1Q8N573 874 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 ZNF563Q8TA94 476 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 OLIG1Q8TAK6 271 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 STON2Q8WXE9 905 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 HTRA1Q92743 480 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 BORCS5Q969J3 196 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 BTBD1Q9H0C5 482 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 TMEM27Q9HBJ8 222 aa12.77□□□□□ -0.37
NPHP4-203ENST00000378169 B4DGG1 531 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 SOX14O95416 240 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 ANXA8P13928 327 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 TYRP1P17643 537 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 HLA-FP30511 346 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 ALDH3A2P51648 485 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 KCNAB2Q13303 367 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 GRIN2CQ14957 1233 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 PEX5LQ8IYB4 626 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 MINDY1Q8N5J2 469 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 SDR39U1Q9NRG7 319 aaPredicted RBP12.76□□□□□ -0.37
NPHP4-203ENST00000378169 EURLQ9NYK6 297 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 CRNNQ9UBG3 495 aaPredicted RBP12.76□□□□□ -0.37
NPHP4-203ENST00000378169 OAS3Q9Y6K5 1087 aaKnown RBP12.76□□□□□ -0.37
NPHP4-203ENST00000378169 LOC100130705A0A1B0GUX0 176 aa12.76□□□□□ -0.37
NPHP4-203ENST00000378169 ZNF860A6NHJ4 632 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms