RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 RPP38P78345 283 aaKnown RBP13.8□□□□□ -0.2
CD48-201ENST00000368045 TEKQ02763 1124 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 E2F2Q14209 437 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 TRIM16LQ309B1 348 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 ADPRMQ3LIE5 342 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 SYTL3Q4VX76 610 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 UBE2UQ5VVX9 321 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 EGFLAMQ63HQ2 1017 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 AGTRAPQ6RW13 159 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 NPAS3Q8IXF0 933 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 CLECL1Q8IZS7 167 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 C11orf65Q8NCR3 313 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 DYNC2LI1Q8TCX1 351 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 CHTF18Q8WVB6 975 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 SH3KBP1Q96B97 665 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 BBS2Q9BXC9 721 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 STOX2Q9P2F5 926 aaPredicted RBP13.8□□□□□ -0.2
CD48-201ENST00000368045 ZNF282Q9UDV7 671 aaPredicted RBP13.8□□□□□ -0.2
CD48-201ENST00000368045 VPS4AQ9UN37 437 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 TSPAN11A1L157 253 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 E7EQ34 232 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 RNASET2O00584 256 aaKnown RBP13.79□□□□□ -0.2
CD48-201ENST00000368045 LILRB3O75022 631 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 LRG1P02750 347 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 CDH3P22223 829 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 KRT20P35900 424 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 RECQLP46063 649 aaPredicted RBP13.79□□□□□ -0.2
CD48-201ENST00000368045 KCNJ10P78508 379 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 CAMK2GQ13555 558 aaPredicted RBP13.79□□□□□ -0.2
CD48-201ENST00000368045 LAPTM4AQ15012 233 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 OXA1LQ15070 435 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 RGNQ15493 299 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 MLIPQ5VWP3 458 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 PDE12Q6L8Q7 609 aaKnown RBP13.79□□□□□ -0.2
CD48-201ENST00000368045 ADCK1Q86TW2 530 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 ZBTB46Q86UZ6 589 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 HS6ST3Q8IZP7 471 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 ZBTB8BQ8NAP8 495 aaPredicted RBP13.79□□□□□ -0.2
CD48-201ENST00000368045 OR56A3Q8NH54 315 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 ZFP90Q8TF47 636 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 AUTS2Q8WXX7 1259 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 REPS1Q96D71 796 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 HRASLS5Q96KN8 279 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 MTERF1Q99551 399 aaKnown RBP13.79□□□□□ -0.2
CD48-201ENST00000368045 DPH2Q9BQC3 489 aaPredicted RBP13.79□□□□□ -0.2
CD48-201ENST00000368045 DOHHQ9BU89 302 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 SGK2Q9HBY8 427 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 PCDH12Q9NPG4 1184 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 PLCXD1Q9NUJ7 323 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 SIRT5Q9NXA8 310 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 ATP6V1HQ9UI12 483 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 CD84Q9UIB8 345 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 FZD4Q9ULV1 537 aa13.79□□□□□ -0.2
CD48-201ENST00000368045 OR2A25A4D2G3 310 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 ADAMDEC1O15204 470 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 NADKO95544 446 aaPredicted RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 NTRK1P04629 796 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 ANXA4P09525 319 aaPredicted RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 ALOX5P09917 674 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 PABPC1P11940 636 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 NR4A1P22736 598 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 PSMD7P51665 324 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 PRMT2P55345 433 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 RAE1P78406 368 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 RBBP4Q09028 425 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 NAE1Q13564 534 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 HKDC1Q2TB90 917 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 HENMT1Q5T8I9 393 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 LAIR1Q6GTX8 287 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 CCDC149Q6ZUS6 474 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 ANKRD33Q7Z3H0 272 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 HSD11B1LQ7Z5J1 315 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 RAVER1Q8IY67 606 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 MFSD4AQ8N468 514 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 RNF175Q8N4F7 328 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 C1orf52Q8N6N3 182 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 CHST14Q8NCH0 376 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 OR6Q1Q8NGQ2 317 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 TMEM159Q96B96 161 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 VPS35Q96QK1 796 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 ALPK1Q96QP1 1244 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 BHLHE41Q9C0J9 482 aaPredicted RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 RC3H2Q9HBD1 1191 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 ERVK-11Q9UQG0 969 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 PIKFYVEQ9Y2I7 2098 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 MGAT4DA6NG13 374 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 GABRR3A8MPY1 467 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 A8MVJ9 347 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 BOLA2-SMG1P6H3BVE0 249 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 YY2O15391 372 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 AOC2O75106 756 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 ATG13O75143 517 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 WBP4O75554 376 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 DIRAS1O95057 198 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 FADS2O95864 444 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 IDSP22304 550 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 TIA1P31483 386 aaKnown RBP eCLIP13.78□□□□□ -0.2
CD48-201ENST00000368045 PPM1AP35813 382 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 RPL3P39023 403 aaKnown RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms