RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MYO1CO00159 1063 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 ADAM10O14672 748 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 NEURL1O76050 574 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 IGFBP2P18065 325 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 STIP1P31948 543 aaKnown RBP13.05□□□□□ -0.32
VPS29-201ENST00000360579 XCR1P46094 333 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 NAP1L1P55209 391 aaKnown RBP13.05□□□□□ -0.32
VPS29-201ENST00000360579 TSTA3Q13630 321 aaPredicted RBP13.05□□□□□ -0.32
VPS29-201ENST00000360579 TMEM211Q6ICI0 200 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 AADACL2Q6P093 401 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 ADCK2Q7Z695 626 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 ANKRD37Q7Z713 158 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 PCGF5Q86SE9 256 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 POGLUT1Q8NBL1 392 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 CHDHQ8NE62 594 aaPredicted RBP13.05□□□□□ -0.32
VPS29-201ENST00000360579 OR9A4Q8NGU2 314 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 SLC35B2Q8TB61 432 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 ALG3Q92685 438 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 PANX2Q96RD6 677 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 LPAR4Q99677 370 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 TMUB1Q9BVT8 246 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 SYNPO2LQ9H987 977 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 MARCH4Q9P2E8 410 aaPredicted RBP13.05□□□□□ -0.32
VPS29-201ENST00000360579 TFR2Q9UP52 801 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 R3HDM2Q9Y2K5 976 aaKnown RBP13.05□□□□□ -0.32
VPS29-201ENST00000360579 ASB1Q9Y576 335 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 PFDN6O15212 129 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 P2RX6O15547 441 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 SLC25A12O75746 678 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 CATP04040 527 aaKnown RBP13.04□□□□□ -0.32
VPS29-201ENST00000360579 CYLC1P35663 651 aaPredicted RBP13.04□□□□□ -0.32
VPS29-201ENST00000360579 PNLIPRP1P54315 467 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 EIF3BP55884 814 aaKnown RBP13.04□□□□□ -0.32
VPS29-201ENST00000360579 HSF1Q00613 529 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 ACTN3Q08043 901 aaPredicted RBP13.04□□□□□ -0.32
VPS29-201ENST00000360579 MAPKAPK3Q16644 382 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.04□□□□□ -0.32
VPS29-201ENST00000360579 MEI1Q5TIA1 1274 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 PAPD4Q6PIY7 484 aaKnown RBP13.04□□□□□ -0.32
VPS29-201ENST00000360579 C3P1Q6ZMU1 363 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 CHERPQ8IWX8 916 aaKnown RBP13.04□□□□□ -0.32
VPS29-201ENST00000360579 AMER2Q8N7J2 671 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 OR51Q1Q8NH59 317 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 NPAS2Q99743 824 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 ZNF559Q9BR84 538 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 ETNK1Q9HBU6 452 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 KCNN3Q9UGI6 736 aa13.04□□□□□ -0.32
VPS29-201ENST00000360579 ARHGEF33A8MVX0 844 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 HAT1O14929 419 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 KIF5CO60282 957 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 NME2P1O60361 137 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 PSIP1O75475 530 aaKnown RBP13.03□□□□□ -0.32
VPS29-201ENST00000360579 FAM155BO75949 473 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 IL10P22301 178 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 NME2P22392 152 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 HRH2P25021 359 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 CHRNB4P30926 498 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 PTGS2P35354 604 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 BCL6P41182 706 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 KLF1Q13351 362 aaPredicted RBP13.03□□□□□ -0.32
VPS29-201ENST00000360579 GBX1Q14549 363 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 SFT2D3Q587I9 215 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 PCID2Q5JVF3 399 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 RNF187Q5TA31 235 aaPredicted RBP13.03□□□□□ -0.32
VPS29-201ENST00000360579 CES4AQ5XG92 561 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 SDCCAG8Q86SQ7 713 aaPredicted RBP13.03□□□□□ -0.32
VPS29-201ENST00000360579 TMEM200AQ86VY9 491 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 UBL4BQ8N7F7 174 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 LILRB4Q8NHJ6 448 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 FAM57AQ8TBR7 257 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 TMEM125Q96AQ2 219 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 KCNJ16Q9NPI9 418 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 CHRAC1Q9NRG0 131 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 HCN3Q9P1Z3 774 aa13.03□□□□□ -0.32
VPS29-201ENST00000360579 MAP1AP78559 2803 aaPredicted RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 KCNE1BA0A087WTH5 132 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 E7ENX8 843 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 SMAPO00193 183 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 NDC80O14777 642 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 MAN1A2O60476 641 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 IPO7O95373 1038 aaKnown RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 ESR1P03372 595 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 TPOP07202 933 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 HOXB4P17483 251 aaPredicted RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 MSX1P28360 303 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 DNAJA1P31689 397 aaKnown RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 GRIA1P42261 906 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 CYB561P49447 251 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 ADARP55265 1226 aaKnown RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 RPS15AP62244 130 aaKnown RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 TAP2Q03519 686 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 USP10Q14694 798 aaKnown RBP13.02□□□□□ -0.33
VPS29-201ENST00000360579 ABRAXAS2Q15018 415 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 NSDHLQ15738 373 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 CTSL3PQ5NE16 218 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 THEMIS2Q5TEJ8 643 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 MRNIPQ6NTE8 343 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 CEP128Q6ZU80 1094 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 FGD2Q7Z6J4 655 aa13.02□□□□□ -0.33
VPS29-201ENST00000360579 CD163Q86VB7 1156 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms