RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CCR8P51685 355 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SNRPNP63162 240 aaKnown RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 CGB2Q6NT52 195 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SPESP1Q6UW49 350 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SHISA6Q6ZSJ9 500 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SPATA21Q7Z572 469 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 RABEPKQ7Z6M1 372 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP4-202ENST00000351842 OR7G3Q8NG95 312 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 OR2L8Q8NGY9 312 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 OR56A3Q8NH54 315 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 FAM174AQ8TBP5 190 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 CNDP1Q96KN2 507 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 TSSK3Q96PN8 268 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 GFM1Q96RP9 751 aaKnown RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 MENTQ9BUN1 341 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 NSRP1Q9H0G5 558 aaKnown RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 C5AR2Q9P296 337 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 KLHL42Q9P2K6 505 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 CLCA2Q9UQC9 943 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 EIF3FO00303 357 aaPredicted RBP8.83□□□□□ -1
USP4-202ENST00000351842 ETHE1O95571 254 aa8.83□□□□□ -1
USP4-202ENST00000351842 NTRK1P04629 796 aa8.83□□□□□ -1
USP4-202ENST00000351842 EBLN1P0CF75 366 aa8.83□□□□□ -1
USP4-202ENST00000351842 ALDH9A1P49189 494 aa8.83□□□□□ -1
USP4-202ENST00000351842 RAP1GDS1P52306 607 aa8.83□□□□□ -1
USP4-202ENST00000351842 MAPK10P53779 464 aa8.83□□□□□ -1
USP4-202ENST00000351842 CFHR1Q03591 330 aa8.83□□□□□ -1
USP4-202ENST00000351842 UBAP2LQ14157 1087 aaKnown RBP8.83□□□□□ -1
USP4-202ENST00000351842 HIST2H2ACQ16777 129 aaPredicted RBP8.83□□□□□ -1
USP4-202ENST00000351842 ZNF423Q2M1K9 1284 aa8.83□□□□□ -1
USP4-202ENST00000351842 DEFB134Q4QY38 66 aa8.83□□□□□ -1
USP4-202ENST00000351842 MFSD4BQ5TF39 518 aa8.83□□□□□ -1
USP4-202ENST00000351842 FAM69BQ5VUD6 431 aa8.83□□□□□ -1
USP4-202ENST00000351842 HIST2H2AA3Q6FI13 130 aa8.83□□□□□ -1
USP4-202ENST00000351842 ANKRD26P1Q6NSI1 321 aa8.83□□□□□ -1
USP4-202ENST00000351842 NXPE4Q6UWF7 544 aa8.83□□□□□ -1
USP4-202ENST00000351842 LRRC70Q7Z2Q7 622 aa8.83□□□□□ -1
USP4-202ENST00000351842 MAVSQ7Z434 540 aa8.83□□□□□ -1
USP4-202ENST00000351842 SPRED1Q7Z699 444 aa8.83□□□□□ -1
USP4-202ENST00000351842 ZNF483Q8TF39 744 aaPredicted RBP8.83□□□□□ -1
USP4-202ENST00000351842 C19orf60Q96EN9 201 aa8.83□□□□□ -1
USP4-202ENST00000351842 TACO1Q9BSH4 297 aaKnown RBP8.83□□□□□ -1
USP4-202ENST00000351842 TUBB1Q9H4B7 451 aa8.83□□□□□ -1
USP4-202ENST00000351842 ERVMER34-1Q9H9K5 563 aa8.83□□□□□ -1
USP4-202ENST00000351842 DHCR7Q9UBM7 475 aaKnown RBP8.83□□□□□ -1
USP4-202ENST00000351842 PCOLCE2Q9UKZ9 415 aa8.83□□□□□ -1
USP4-202ENST00000351842 PCDHGA5Q9Y5G8 931 aa8.83□□□□□ -1
USP4-202ENST00000351842 KMT2EQ8IZD2 1858 aa8.83□□□□□ -1
USP4-202ENST00000351842 WASHC1A8K0Z3 465 aa8.83□□□□□ -1
USP4-202ENST00000351842 C10orf142B7Z368 130 aa8.83□□□□□ -1
USP4-202ENST00000351842 KCNJ13O60928 360 aa8.83□□□□□ -1
USP4-202ENST00000351842 H2AFYO75367 372 aaKnown RBP8.83□□□□□ -1
USP4-202ENST00000351842 C1GALT1C1LP0DN25 315 aa8.83□□□□□ -1
USP4-202ENST00000351842 C7P10643 843 aa8.83□□□□□ -1
USP4-202ENST00000351842 CD1EP15812 388 aa8.83□□□□□ -1
USP4-202ENST00000351842 CAPZBP47756 277 aa8.83□□□□□ -1
USP4-202ENST00000351842 PCBP2Q15366 365 aaKnown RBP eCLIP8.83□□□□□ -1
USP4-202ENST00000351842 FRG2Q64ET8 278 aa8.83□□□□□ -1
USP4-202ENST00000351842 MED27Q6P2C8 311 aa8.83□□□□□ -1
USP4-202ENST00000351842 KLHL35Q6PF15 583 aa8.83□□□□□ -1
USP4-202ENST00000351842 WASH2PQ6VEQ5 465 aa8.83□□□□□ -1
USP4-202ENST00000351842 SLCO4C1Q6ZQN7 724 aa8.83□□□□□ -1
USP4-202ENST00000351842 LCA5Q86VQ0 697 aa8.83□□□□□ -1
USP4-202ENST00000351842 TCAIMQ8N3R3 496 aa8.83□□□□□ -1
USP4-202ENST00000351842 ZNF655Q8N720 491 aaPredicted RBP8.83□□□□□ -1
USP4-202ENST00000351842 POU5F2Q8N7G0 328 aa8.83□□□□□ -1
USP4-202ENST00000351842 OR9I1Q8NGQ6 314 aa8.83□□□□□ -1
USP4-202ENST00000351842 SLC13A3Q8WWT9 602 aa8.83□□□□□ -1
USP4-202ENST00000351842 L3HYPDHQ96EM0 354 aa8.83□□□□□ -1
USP4-202ENST00000351842 FRG2BQ96QU4 278 aa8.83□□□□□ -1
USP4-202ENST00000351842 AIF1LQ9BQI0 150 aa8.83□□□□□ -1
USP4-202ENST00000351842 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.83□□□□□ -1
USP4-202ENST00000351842 KLHL31Q9H511 634 aa8.83□□□□□ -1
USP4-202ENST00000351842 HEY2Q9UBP5 337 aa8.83□□□□□ -1
USP4-202ENST00000351842 SDK2Q58EX2 2172 aa8.83□□□□□ -1
USP4-202ENST00000351842 ERI3O43414 337 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 NUDT21O43809 227 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 PRKRAO75569 313 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 KRT6AP02538 564 aa8.82□□□□□ -1
USP4-202ENST00000351842 KRT6BP04259 564 aa8.82□□□□□ -1
USP4-202ENST00000351842 CD59P13987 128 aa8.82□□□□□ -1
USP4-202ENST00000351842 SPINK2P20155 84 aa8.82□□□□□ -1
USP4-202ENST00000351842 HOXD12P35452 270 aa8.82□□□□□ -1
USP4-202ENST00000351842 BCL6P41182 706 aa8.82□□□□□ -1
USP4-202ENST00000351842 FASLGP48023 281 aa8.82□□□□□ -1
USP4-202ENST00000351842 KRT6CP48668 564 aa8.82□□□□□ -1
USP4-202ENST00000351842 NOVA1P51513 510 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 DIO3P55073 304 aa8.82□□□□□ -1
USP4-202ENST00000351842 CSNK1G2P78368 415 aa8.82□□□□□ -1
USP4-202ENST00000351842 PLA2G2CQ5R387 149 aa8.82□□□□□ -1
USP4-202ENST00000351842 GKAP1Q5VSY0 366 aaPredicted RBP8.82□□□□□ -1
USP4-202ENST00000351842 PRSS41Q7RTY9 318 aa8.82□□□□□ -1
USP4-202ENST00000351842 MTDHQ86UE4 582 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 CLYBLQ8N0X4 340 aa8.82□□□□□ -1
USP4-202ENST00000351842 ANKRD53Q8N9V6 530 aa8.82□□□□□ -1
USP4-202ENST00000351842 OR2T11Q8NH01 316 aa8.82□□□□□ -1
USP4-202ENST00000351842 APMAPQ9HDC9 416 aa8.82□□□□□ -1
USP4-202ENST00000351842 WASH6PQ9NQA3 447 aa8.82□□□□□ -1
USP4-202ENST00000351842 CAPN7Q9Y6W3 813 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms