RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 VIPAS39Q9H9C1 493 aa15.06■□□□□ 0
CLN3-201ENST00000333496 ZNF304Q9HCX3 659 aa15.06■□□□□ 0
CLN3-201ENST00000333496 CTSFQ9UBX1 484 aa15.06■□□□□ 0
CLN3-201ENST00000333496 MRPS2Q9Y399 296 aaKnown RBP15.06■□□□□ 0
CLN3-201ENST00000333496 TAPBPO15533 448 aa15.06■□□□□ 0
CLN3-201ENST00000333496 CD63P08962 238 aa15.06■□□□□ 0
CLN3-201ENST00000333496 PIM1P11309 404 aaPredicted RBP15.06■□□□□ 0
CLN3-201ENST00000333496 SFTPCP11686 197 aa15.06■□□□□ 0
CLN3-201ENST00000333496 FOLR3P41439 243 aa15.06■□□□□ 0
CLN3-201ENST00000333496 GDF5P43026 501 aa15.06■□□□□ 0
CLN3-201ENST00000333496 SLC6A12P48065 614 aa15.06■□□□□ 0
CLN3-201ENST00000333496 HNMTP50135 292 aa15.06■□□□□ 0
CLN3-201ENST00000333496 ATP6V0D1P61421 351 aa15.06■□□□□ 0
CLN3-201ENST00000333496 GARNL3Q5VVW2 1013 aa15.06■□□□□ 0
CLN3-201ENST00000333496 PRMT9Q6P2P2 845 aa15.06■□□□□ 0
CLN3-201ENST00000333496 RAPH1Q70E73 1250 aa15.06■□□□□ 0
CLN3-201ENST00000333496 ISCA2Q86U28 154 aa15.06■□□□□ 0
CLN3-201ENST00000333496 ZNF740Q8NDX6 193 aa15.06■□□□□ 0
CLN3-201ENST00000333496 KIAA1191Q96A73 305 aa15.06■□□□□ 0
CLN3-201ENST00000333496 ABHD17AQ96GS6 310 aa15.06■□□□□ 0
CLN3-201ENST00000333496 TSNARE1Q96NA8 513 aa15.06■□□□□ 0
CLN3-201ENST00000333496 SLC25A18Q9H1K4 315 aa15.06■□□□□ 0
CLN3-201ENST00000333496 WDR54Q9H977 334 aa15.06■□□□□ 0
CLN3-201ENST00000333496 ARGFXA6NJG6 315 aa15.05■□□□□ -0
CLN3-201ENST00000333496 VSTM2BA6NLU5 285 aa15.05■□□□□ -0
CLN3-201ENST00000333496 TXNDC9O14530 226 aa15.05■□□□□ -0
CLN3-201ENST00000333496 MYBL2P10244 700 aa15.05■□□□□ -0
CLN3-201ENST00000333496 CRABP2P29373 138 aa15.05■□□□□ -0
CLN3-201ENST00000333496 OTX2P32243 289 aa15.05■□□□□ -0
CLN3-201ENST00000333496 CCR8P51685 355 aa15.05■□□□□ -0
CLN3-201ENST00000333496 C19orf57Q0VDD7 668 aa15.05■□□□□ -0
CLN3-201ENST00000333496 ATP1A4Q13733 1029 aa15.05■□□□□ -0
CLN3-201ENST00000333496 UAP1Q16222 522 aaPredicted RBP15.05■□□□□ -0
CLN3-201ENST00000333496 FBXO48Q5FWF7 155 aa15.05■□□□□ -0
CLN3-201ENST00000333496 GPSM1Q86YR5 675 aa15.05■□□□□ -0
CLN3-201ENST00000333496 KLHDC8AQ8IYD2 350 aa15.05■□□□□ -0
CLN3-201ENST00000333496 SLC44A1Q8WWI5 657 aa15.05■□□□□ -0
CLN3-201ENST00000333496 SLC5A11Q8WWX8 675 aa15.05■□□□□ -0
CLN3-201ENST00000333496 THAP11Q96EK4 314 aa15.05■□□□□ -0
CLN3-201ENST00000333496 MVB12AQ96EY5 273 aa15.05■□□□□ -0
CLN3-201ENST00000333496 TMEM79Q9BSE2 394 aa15.05■□□□□ -0
CLN3-201ENST00000333496 ING2Q9H160 280 aa15.05■□□□□ -0
CLN3-201ENST00000333496 IGSF5Q9NSI5 407 aa15.05■□□□□ -0
CLN3-201ENST00000333496 TLK1Q9UKI8 766 aa15.05■□□□□ -0
CLN3-201ENST00000333496 TLN1Q9Y490 2541 aaKnown RBP15.05■□□□□ -0
CLN3-201ENST00000333496 K7EM74 188 aa15.04■□□□□ -0
CLN3-201ENST00000333496 ALDOAP04075 364 aaKnown RBP15.04■□□□□ -0
CLN3-201ENST00000333496 C2P06681 752 aa15.04■□□□□ -0
CLN3-201ENST00000333496 IRF9Q00978 393 aa15.04■□□□□ -0
CLN3-201ENST00000333496 NFATC3Q12968 1075 aa15.04■□□□□ -0
CLN3-201ENST00000333496 FAM53BQ14153 422 aa15.04■□□□□ -0
CLN3-201ENST00000333496 CASP8Q14790 479 aa15.04■□□□□ -0
CLN3-201ENST00000333496 SHISA6Q6ZSJ9 500 aa15.04■□□□□ -0
CLN3-201ENST00000333496 MRGPREQ86SM8 312 aa15.04■□□□□ -0
CLN3-201ENST00000333496 RAB43Q86YS6 212 aa15.04■□□□□ -0
CLN3-201ENST00000333496 GSPT2Q8IYD1 628 aaKnown RBP15.04■□□□□ -0
CLN3-201ENST00000333496 CENPLQ8N0S6 344 aaPredicted RBP15.04■□□□□ -0
CLN3-201ENST00000333496 AMER3Q8N944 861 aa15.04■□□□□ -0
CLN3-201ENST00000333496 EIF1ADQ8N9N8 165 aaKnown RBP15.04■□□□□ -0
CLN3-201ENST00000333496 MFSD9Q8NBP5 474 aa15.04■□□□□ -0
CLN3-201ENST00000333496 KCT2Q8NC54 265 aa15.04■□□□□ -0
CLN3-201ENST00000333496 UHMK1Q8TAS1 419 aaKnown RBP15.04■□□□□ -0
CLN3-201ENST00000333496 COL26A1Q96A83 441 aa15.04■□□□□ -0
CLN3-201ENST00000333496 ESAMQ96AP7 390 aa15.04■□□□□ -0
CLN3-201ENST00000333496 NXNL1Q96CM4 212 aa15.04■□□□□ -0
CLN3-201ENST00000333496 PKNOX2Q96KN3 472 aa15.04■□□□□ -0
CLN3-201ENST00000333496 DRC3Q9H069 523 aa15.04■□□□□ -0
CLN3-201ENST00000333496 SOX17Q9H6I2 414 aaPredicted RBP15.04■□□□□ -0
CLN3-201ENST00000333496 MED4Q9NPJ6 270 aa15.04■□□□□ -0
CLN3-201ENST00000333496 SNX15Q9NRS6 342 aa15.04■□□□□ -0
CLN3-201ENST00000333496 PSD3Q9NYI0 1048 aa15.04■□□□□ -0
CLN3-201ENST00000333496 IGLV3-12A0A075B6K2 115 aa15.03■□□□□ -0
CLN3-201ENST00000333496 A0A0A6YYC8 382 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 TRBC2A0A5B9 178 aa15.03■□□□□ -0
CLN3-201ENST00000333496 I3L1I5 382 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 RFPL1O75677 317 aa15.03■□□□□ -0
CLN3-201ENST00000333496 WDR47O94967 919 aa15.03■□□□□ -0
CLN3-201ENST00000333496 LTA4HP09960 611 aaKnown RBP15.03■□□□□ -0
CLN3-201ENST00000333496 FAM153BP0C7A2 387 aa15.03■□□□□ -0
CLN3-201ENST00000333496 TFEBP19484 476 aa15.03■□□□□ -0
CLN3-201ENST00000333496 GRK3P35626 688 aa15.03■□□□□ -0
CLN3-201ENST00000333496 GGT5P36269 586 aa15.03■□□□□ -0
CLN3-201ENST00000333496 SLC26A3P40879 764 aa15.03■□□□□ -0
CLN3-201ENST00000333496 FAM153CQ494X1 144 aa15.03■□□□□ -0
CLN3-201ENST00000333496 HSP90B2PQ58FF3 399 aa15.03■□□□□ -0
CLN3-201ENST00000333496 VWA2Q5GFL6 755 aa15.03■□□□□ -0
CLN3-201ENST00000333496 CDKL4Q5MAI5 379 aa15.03■□□□□ -0
CLN3-201ENST00000333496 TMEM214Q6NUQ4 689 aaKnown RBP15.03■□□□□ -0
CLN3-201ENST00000333496 PRSS41Q7RTY9 318 aa15.03■□□□□ -0
CLN3-201ENST00000333496 PPP1R32Q7Z5V6 425 aa15.03■□□□□ -0
CLN3-201ENST00000333496 TMPRSS11BQ86T26 416 aa15.03■□□□□ -0
CLN3-201ENST00000333496 TBC1D1Q86TI0 1168 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 SHISA5Q8N114 240 aa15.03■□□□□ -0
CLN3-201ENST00000333496 PDPRQ8NCN5 879 aa15.03■□□□□ -0
CLN3-201ENST00000333496 STT3BQ8TCJ2 826 aa15.03■□□□□ -0
CLN3-201ENST00000333496 KCTD4Q8WVF5 259 aa15.03■□□□□ -0
CLN3-201ENST00000333496 MOCOSQ96EN8 888 aa15.03■□□□□ -0
CLN3-201ENST00000333496 MMABQ96EY8 250 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 ATOH8Q96SQ7 321 aa15.03■□□□□ -0
CLN3-201ENST00000333496 ALG9Q9H6U8 611 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms