RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 BTN2A2Q8WVV5 523 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 DMRTB1Q96MA1 342 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 DOHHQ9BU89 302 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 RNF208Q9H0X6 261 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 SP140LQ9H930 580 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 FARSBQ9NSD9 589 aaKnown RBP14.28□□□□□ -0.12
TCOF1-201ENST00000323668 CA12O43570 354 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 PRG2P13727 222 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 OR1E2P47887 323 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 GJA8P48165 433 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 LCN1P1Q5VSP4 162 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 CMTM8Q8IZV2 173 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 UBE2J2Q8N2K1 259 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 CHDHQ8NE62 594 aaPredicted RBP14.28□□□□□ -0.12
TCOF1-201ENST00000323668 ZBED6CLQ96FA7 236 aaPredicted RBP14.28□□□□□ -0.12
TCOF1-201ENST00000323668 SLC30A2Q9BRI3 323 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 ENPP5Q9UJA9 477 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 USP22Q9UPT9 525 aa14.28□□□□□ -0.12
TCOF1-201ENST00000323668 TARM1B6A8C7 271 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 DGKEP52429 567 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 PLEKHS1Q5SXH7 462 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 LIPJQ5W064 366 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 BRAT1Q6PJG6 821 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 GALNT10Q86SR1 603 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 BEND7Q8N7W2 519 aaPredicted RBP14.27□□□□□ -0.12
TCOF1-201ENST00000323668 ALPK1Q96QP1 1244 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 DPH2Q9BQC3 489 aaPredicted RBP14.27□□□□□ -0.12
TCOF1-201ENST00000323668 B4GALT6Q9UBX8 382 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 ING4Q9UNL4 249 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 MRPS23Q9Y3D9 190 aaKnown RBP14.27□□□□□ -0.12
TCOF1-201ENST00000323668 ZNF451Q9Y4E5 1061 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 PCDHB11Q9Y5F2 797 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 LSM1O15116 133 aaKnown RBP14.27□□□□□ -0.12
TCOF1-201ENST00000323668 VIPP01282 170 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 GALTP07902 379 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 TLX1P31314 330 aaPredicted RBP14.27□□□□□ -0.12
TCOF1-201ENST00000323668 KLHL22Q53GT1 634 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 RUNDC3AQ59EK9 446 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 Q6ZVU0 165 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 PRSS48Q7RTY5 328 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 SH3YL1Q96HL8 342 aaPredicted RBP14.27□□□□□ -0.12
TCOF1-201ENST00000323668 MYOCQ99972 504 aa14.27□□□□□ -0.12
TCOF1-201ENST00000323668 SPIN1Q9Y657 262 aaPredicted RBP14.27□□□□□ -0.12
TCOF1-201ENST00000323668 PDPK1O15530 556 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 CHST10O43529 356 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 KLK1P06870 262 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 MATN1P21941 496 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 MYL9P24844 172 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 RPS13P62277 151 aaKnown RBP14.27□□□□□ -0.13
TCOF1-201ENST00000323668 KLHL12Q53G59 568 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 C10orf62Q5T681 223 aaPredicted RBP14.27□□□□□ -0.13
TCOF1-201ENST00000323668 TMEM207Q6UWW9 146 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 RD3Q7Z3Z2 195 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 GTF2H4Q92759 462 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 RHBDF1Q96CC6 855 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 ZSCAN5AQ9BUG6 496 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 COL5A3P25940 1745 aaPredicted RBP14.27□□□□□ -0.13
TCOF1-201ENST00000323668 A0A0U1RQS6 177 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 A0A1B0GTW7 788 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 UPK3BL1B0FP48 263 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 UPK3BL2E5RIL1 263 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 PSIP1O75475 530 aaKnown RBP14.27□□□□□ -0.13
TCOF1-201ENST00000323668 GJB3O75712 270 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 GBAP04062 536 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.27□□□□□ -0.13
TCOF1-201ENST00000323668 FGD2Q7Z6J4 655 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 ZSWIM9Q86XI8 627 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 PTRH1Q86Y79 214 aaKnown RBP14.27□□□□□ -0.13
TCOF1-201ENST00000323668 TEX26Q8N6G2 289 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 TRPV1Q8NER1 839 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 FERD3LQ96RJ6 166 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 OCEL1Q9H607 264 aa14.27□□□□□ -0.13
TCOF1-201ENST00000323668 SCN9AQ15858 1988 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 K7ERQ8 282 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 PRNPP04156 253 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 KRT74Q7RTS7 529 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 TBC1D15Q8TC07 691 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 GPN2Q9H9Y4 310 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-201ENST00000323668 EQTNQ9NQ60 294 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 MS4A12Q9NXJ0 267 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 ZNF780BQ9Y6R6 833 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 C6orf47O95873 294 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 DHFRP00374 187 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 H1F0P07305 194 aaKnown RBP14.26□□□□□ -0.13
TCOF1-201ENST00000323668 PSMD8P48556 350 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 CRB2Q5IJ48 1285 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 PLEKHG7Q6ZR37 379 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 ADAMTS15Q8TE58 950 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 RFKQ969G6 155 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 FEVQ99581 238 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 UCK2Q9BZX2 261 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 OR51B5Q9H339 312 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 DSN1Q9H410 356 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 E2F3O00716 465 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 PGRMC2O15173 223 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 JUPP14923 745 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 ZNF10P21506 573 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-201ENST00000323668 SHMT2P34897 504 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 RGRP47804 291 aa14.26□□□□□ -0.13
TCOF1-201ENST00000323668 CD97P48960 835 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms