RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 CIB1Q99828 191 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 VAPAQ9P0L0 249 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 LRRC37AA6NMS7 1700 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 TRPM7Q96QT4 1865 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 FABP12A6NFH5 140 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 OR10H2O60403 315 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SEC14L2O76054 403 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 IDH2P48735 452 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 GGTA1PQ4G0N0 100 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 APTXQ7Z2E3 356 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZNF461Q8TAF7 563 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 RNF217Q8TC41 542 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZFAND1Q8TCF1 268 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 DAZLQ92904 295 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 C11orf24Q96F05 449 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 TRAF4Q9BUZ4 470 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 KLK4Q9Y5K2 254 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 UNC119BA6NIH7 251 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 LACTBL1A8MY62 500 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 RPS17P08708 135 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 ARF4P18085 180 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 SHMT2P34897 504 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PPT1P50897 306 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PPP3CAQ08209 521 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ARL13AQ5H913 290 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 GCNT6Q5T4J0 391 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 FAM20CQ8IXL6 584 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 YIPF4Q9BSR8 244 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 AARSD1Q9BTE6 412 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 SIX2Q9NPC8 291 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CACNA1CQ13936 2221 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 EDDM13A0A1B0GTR0 161 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MATN1P21941 496 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MLLT3P42568 568 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 STC1P52823 247 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PPARDQ03181 441 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 TIGD3Q6B0B8 471 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 TMEM214Q6NUQ4 689 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 C6orf120Q7Z4R8 191 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 GPAT4Q86UL3 456 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 JAZF1Q86VZ6 243 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 BPHLQ86WA6 291 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 VRK3Q8IV63 474 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 MROQ9BYG7 248 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 FAM117AQ9C073 453 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 NIPAL2Q9H841 368 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 ZNF275Q9NSD4 429 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 NLE1Q9NVX2 485 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 COL16A1Q07092 1604 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 OR6C65A6NJZ3 312 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CAPN5O15484 640 aaPredicted RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 AP1G1O43747 822 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CXCL8P10145 99 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SLC6A8P48029 635 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CDH8P55286 799 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SLC27A4Q6P1M0 643 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CERS5Q8N5B7 392 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 IRF2BPLQ9H1B7 796 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PRDM12Q9H4Q4 367 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 A0A0G2JMP0 313 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 E9PAM4 449 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 RNASET2O00584 256 aaKnown RBP3.91□□□□□ -1.78
USH2A-201ENST00000307340 GPR1P46091 355 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SLC25A3Q00325 362 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 OVGP1Q12889 678 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PCBP2Q15366 365 aaKnown RBP eCLIP3.91□□□□□ -1.78
USH2A-201ENST00000307340 TCTE1Q5JU00 501 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 METTL11BQ5VVY1 283 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 SLC36A4Q6YBV0 504 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 GCNT7Q6ZNI0 430 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CMIPQ8IY22 773 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 FAM109AQ8N4B1 249 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 OR4M2Q8NGB6 313 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 OR2T4Q8NH00 348 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 CASD1Q96PB1 797 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 PI4K2AQ9BTU6 479 aa3.91□□□□□ -1.78
USH2A-201ENST00000307340 A0A087X0B3 334 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 CREBL2O60519 120 aaPredicted RBP3.9□□□□□ -1.78
USH2A-201ENST00000307340 PRAMEF1O95521 474 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 PTHP01270 115 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 ALPIP09923 528 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 CSNK1DP48730 415 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 GALK2Q01415 458 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 PCSK7Q16549 785 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 SLX4IPQ5VYV7 408 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 ZNF227Q86WZ6 799 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 FAM131BQ86XD5 332 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 CCDC28AQ8IWP9 274 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 BBS10Q8TAM1 723 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 GRIN3AQ8TCU5 1115 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 KLRG1Q96E93 195 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 SERINC2Q96SA4 455 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 POLE4Q9NR33 117 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 TGFB1I1O43294 461 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 CYC1P08574 325 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 RAB40ALP0C0E4 278 aa3.9□□□□□ -1.78
USH2A-201ENST00000307340 CD44P16070 742 aaKnown RBP3.9□□□□□ -1.78
USH2A-201ENST00000307340 XRCC1P18887 633 aaPredicted RBP3.9□□□□□ -1.78
USH2A-201ENST00000307340 HIST1H1TP22492 207 aaPredicted RBP3.9□□□□□ -1.78
USH2A-201ENST00000307340 CD81P60033 236 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms