RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CBR4Q8N4T8 237 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ADAMTS14Q8WXS8 1223 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 PEX13Q92968 403 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ASB9Q96DX5 294 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 OR52E6Q96RD3 313 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 OR2AG1Q9H205 316 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ZDHHC3Q9NYG2 299 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 RP1P56715 2156 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 C15orf38-AP3S2A0A0A6YYH1 394 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 K7EPI3 171 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 OR7A17O14581 309 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 TAPBPO15533 448 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SPINT1O43278 529 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 FZD6O60353 706 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 E2F6O75461 281 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 RFPL3O75679 317 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 RSL1D1O76021 490 aaKnown RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 RPS17P08708 135 aaKnown RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ATP1B2P14415 290 aaPredicted RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SLC6A2P23975 617 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 PDHA2P29803 388 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 AQP1P29972 269 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 RXRGP48443 463 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SPINT3P49223 89 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ERVK-8P63133 956 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CDKL1Q00532 357 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SELPLGQ14242 412 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CACHD1Q5VU97 1274 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 NANOGP8Q6NSW7 305 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ZNF621Q6ZSS3 439 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SZRD1Q7Z422 152 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ARPINQ7Z6K5 226 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ZNF786Q8N393 782 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 FATE1Q969F0 183 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ERVMER34-1Q9H9K5 563 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 NANOGQ9H9S0 305 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 LRTM1Q9HBL6 345 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 KCTD5Q9NXV2 234 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 NUDT4Q9NZJ9 180 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SH3BP4Q9P0V3 963 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SPASTQ9UBP0 616 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 PLAGL1Q9UM63 463 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 PDE10AQ9Y233 779 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 PCDH15Q96QU1 1955 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SPTY2D1-AS1A0A0U1RR47 76 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 GNG14A0A1W2PPG7 69 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 AQP9O43315 295 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 RGS14O43566 566 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 LINGO3P0C6S8 592 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 MYCLP1P12525 358 aaPredicted RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 GPR1P46091 355 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 GNPDA1P46926 289 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 IST1P53990 364 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CDH15P55291 814 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 OR4D2P58180 307 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CYP4F3Q08477 520 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 LAPTM4AQ15012 233 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 LRRC23Q53EV4 343 aaPredicted RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 HES3Q5TGS1 186 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ALG1LQ6GMV1 187 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 GLYATQ6IB77 296 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ADCK2Q7Z695 626 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 DCP2Q8IU60 420 aaKnown RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 PROKR1Q8TCW9 393 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 FAM162AQ96A26 154 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 FAM131CQ96AQ9 280 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 SH3KBP1Q96B97 665 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 DCBLD2Q96PD2 775 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 NRTNQ99748 197 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CD244Q9BZW8 370 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 LEF1Q9UJU2 399 aaPredicted RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 CNOT6Q9ULM6 557 aaKnown RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 MAGED1Q9Y5V3 778 aaPredicted RBP8.36□□□□□ -1.07
VPS4B-201ENST00000238497 DGKBQ9Y6T7 804 aa8.36□□□□□ -1.07
VPS4B-201ENST00000238497 ATRXP46100 2492 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 TNRC6BQ9UPQ9 1833 aaKnown RBP8.35□□□□□ -1.07
VPS4B-201ENST00000238497 TRABD2BA6NFA1 517 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 GAPDHSO14556 408 aaPredicted RBP8.35□□□□□ -1.07
VPS4B-201ENST00000238497 ARPC2O15144 300 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 ZNF682O95780 498 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 KRT6AP02538 564 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 KRT6BP04259 564 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 FGF4P08620 206 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 C1SP09871 688 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 CYP2A6P11509 494 aaPredicted RBP8.35□□□□□ -1.07
VPS4B-201ENST00000238497 ADSLP30566 484 aaPredicted RBP8.35□□□□□ -1.07
VPS4B-201ENST00000238497 MMP12P39900 470 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 GSSP48637 474 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 KRT6CP48668 564 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 TMTC4Q5T4D3 741 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 ADNP2Q6IQ32 1131 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 BLOC1S3Q6QNY0 202 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 TAF8Q7Z7C8 310 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 SATL1Q86VE3 508 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 GALNT15Q8N3T1 639 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 ZNF548Q8NEK5 533 aaPredicted RBP8.35□□□□□ -1.07
VPS4B-201ENST00000238497 P2RY12Q9H244 342 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 CCDC86Q9H6F5 360 aaKnown RBP8.35□□□□□ -1.07
VPS4B-201ENST00000238497 MSRB2Q9Y3D2 182 aa8.35□□□□□ -1.07
VPS4B-201ENST00000238497 GPR45Q9Y5Y3 372 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms