RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 NXPE2Q96DL1 559 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 ZNF668Q96K58 619 aaPredicted RBP12.61□□□□□ -0.39
MSH2-201ENST00000233146 COQ10AQ96MF6 247 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 CINPQ9BW66 212 aaPredicted RBP12.61□□□□□ -0.39
MSH2-201ENST00000233146 SLC29A3Q9BZD2 475 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 KLF15Q9UIH9 416 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 ERVK-19Q9WJR5 959 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 SLC22A7Q9Y694 548 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 ELOVL7A1L3X0 281 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 SGCEO43556 437 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 VIPP01282 170 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 CNPP09543 421 aaKnown RBP12.61□□□□□ -0.39
MSH2-201ENST00000233146 OR56A5P0C7T3 313 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 SLC2A2P11168 524 aaPredicted RBP12.61□□□□□ -0.39
MSH2-201ENST00000233146 GOT1P17174 413 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 MAPK1P28482 360 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 ICAM3P32942 547 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 NFKB2Q00653 900 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 ST3GAL4Q11206 333 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 MPEG1Q2M385 716 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 SEZ6Q53EL9 994 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 SLFN12LQ6IEE8 588 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 BVESQ8NE79 360 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 OR10A6Q8NH74 314 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 SLC13A3Q8WWT9 602 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 MRPL48Q96GC5 212 aaKnown RBP12.61□□□□□ -0.39
MSH2-201ENST00000233146 NT5DC2Q9H857 520 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 PRMT7Q9NVM4 692 aaPredicted RBP12.61□□□□□ -0.39
MSH2-201ENST00000233146 ZNF222Q9UK12 451 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 LY75O60449 1722 aa12.61□□□□□ -0.39
MSH2-201ENST00000233146 CYP17A1P05093 508 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 CYP2B6P20813 491 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 GMPSP49915 693 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 AGFG1P52594 562 aaKnown RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 DCDC1P59894 354 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 YWHAHQ04917 246 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 PRKG2Q13237 762 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 CAMK2DQ13557 499 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 DOC2BQ14184 412 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 ATP6AP1LQ52LC2 224 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 BICRALQ6AI39 1079 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 GDPGP1Q6ZNW5 385 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 OR6P1Q8NGX9 317 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 MTERF3Q96E29 417 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 CXorf58Q96LI9 332 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 KCNJ15Q99712 375 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 APOL2Q9BQE5 337 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 ZNF251Q9BRH9 671 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 UCK1Q9HA47 277 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 AGO4Q9HCK5 861 aaKnown RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 EXOSC4Q9NPD3 245 aaKnown RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 PHF11Q9UIL8 331 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 ERI2A8K979 691 aaKnown RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 ZNF670-ZNF695F2Z2N8 137 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 H0YCG3 227 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 GTPBP1O00178 669 aaKnown RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 APEX1P27695 318 aaKnown RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 PTPN11Q06124 597 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 SF3A2Q15428 464 aaKnown RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 SNAPC1Q16533 368 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 ZNF699Q32M78 642 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 ZDHHC21Q8IVQ6 265 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 TMEM145Q8NBT3 493 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 CCNYQ8ND76 341 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 C9orf43Q8TAL5 461 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 UBA3Q8TBC4 463 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 KHSRPQ92945 711 aaKnown RBP eCLIP12.6□□□□□ -0.396e-6■■■■□ 21.5
MSH2-201ENST00000233146 ZNF419Q96HQ0 510 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 PYURFQ96I23 114 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 GBA2Q9HCG7 927 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 HCN3Q9P1Z3 774 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 CREG1O75629 220 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 PIGRP01833 764 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 IFNA4P05014 189 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 HBQ1P09105 142 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 NCF1P14598 390 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 AP5B1Q2VPB7 878 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 PCID2Q5JVF3 399 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 OR2T5Q6IEZ7 315 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 C12orf40Q86WS4 652 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 Q8N402 240 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 ARL6IP6Q8N6S5 226 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 OR4F6Q8NGB9 312 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 OR2T29Q8NH02 315 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 SLC25A46Q96AG3 418 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 C10orf90Q96M02 699 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 TMEM209Q96SK2 561 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 SOSTQ9BQB4 213 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 PRR14Q9BWN1 585 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 ZNF768Q9H5H4 540 aaKnown RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 PPP1R3EQ9H7J1 279 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 PDP1Q9P0J1 537 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 VAPAQ9P0L0 249 aa12.6□□□□□ -0.39
MSH2-201ENST00000233146 KLHL8Q9P2G9 620 aaPredicted RBP12.6□□□□□ -0.39
MSH2-201ENST00000233146 M0R233 179 aa12.59□□□□□ -0.39
MSH2-201ENST00000233146 HRGP04196 525 aa12.59□□□□□ -0.39
MSH2-201ENST00000233146 ACAA1P09110 424 aaPredicted RBP12.59□□□□□ -0.39
MSH2-201ENST00000233146 FPR1P21462 350 aa12.59□□□□□ -0.39
MSH2-201ENST00000233146 ITGB7P26010 798 aa12.59□□□□□ -0.39
MSH2-201ENST00000233146 STOMP27105 288 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms