RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MAMLD1Q13495 774 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MOGQ16653 247 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MPP7Q5T2T1 576 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 C11orf63Q6NUN7 778 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 TICAM1Q8IUC6 712 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ANKFN1Q8N957 763 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 FBXO30Q8TB52 745 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NELL1Q92832 810 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 NTAN1Q96AB6 310 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PGAP3Q96FM1 320 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 TIMD4Q96H15 378 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CPXM1Q96SM3 734 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 DOHHQ9BU89 302 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 UNKQ9C0B0 810 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SP140LQ9H930 580 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SMURF1Q9HCE7 757 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 TAC3Q9UHF0 121 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 RIMKLBQ9ULI2 386 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PCDHGA8Q9Y5G5 932 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 BRWD3Q6RI45 1802 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TSPAN9O75954 239 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 KCNK5O95279 499 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CTDNEP1O95476 244 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 IL2RAP01589 272 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GCH1P30793 250 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TTKP33981 857 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 AGTR2P50052 363 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CHIT1Q13231 466 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TRIM25Q14258 630 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF267Q14586 743 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 NFATC4Q14934 902 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 SLC35G1Q2M3R5 365 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF585AQ6P3V2 769 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 C19orf48Q6RUI8 117 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 KCNK18Q7Z418 384 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ARPINQ7Z6K5 226 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF687Q8N1G0 1237 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TRAM1L1Q8N609 369 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TSEN2Q8NCE0 465 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ACTRT2Q8TDY3 377 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF75CPQ92670 426 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CERS2Q96G23 380 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MFRPQ9BY79 579 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TAS2R9Q9NYW1 312 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 EFR3BQ9Y2G0 817 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 DDX3YO15523 660 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ASNA1O43681 348 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PRICKLE3O43900 615 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TRIM3O75382 744 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 HAUS5O94927 633 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CLDN7O95471 211 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PIGRP01833 764 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MYCLP1P12525 358 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ACADSP16219 412 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PTX3P26022 381 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 DNAJA1P31689 397 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 RAPSNQ13702 412 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 MELKQ14680 651 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CHI3L2Q15782 390 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 C1orf53Q5VUE5 145 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 EIF5AL1Q6IS14 154 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ULK3Q6PHR2 472 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 KLHDC10Q6PID8 442 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 HTR3DQ70Z44 454 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GPR137CQ8N3F9 429 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 NLGN4YQ8NFZ3 816 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 EPS8L1Q8TE68 723 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 KIAA1191Q96A73 305 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 RHBDF1Q96CC6 855 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CHP1Q99653 195 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 FNDC11Q9BVV2 318 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CFHR5Q9BXR6 569 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 RDH14Q9HBH5 336 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TMBIM4Q9HC24 238 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 SEMA4BQ9NPR2 832 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 HS3ST3A1Q9Y663 406 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 DNALI1O14645 258 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GSTT2P0CG29 244 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GSTT2BP0CG30 244 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UGT1A4P22310 534 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UGT1A3P35503 534 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CLCN2P51788 898 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CLCN4P51793 760 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CASP5P51878 434 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 CD47Q08722 323 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 SMAD2Q15796 467 aaKnown RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 GPRC6AQ5T6X5 926 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 KLHL17Q6TDP4 642 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 UNC5AQ6ZN44 842 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF761Q86XN6 746 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 IRF2BP1Q8IU81 584 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF611Q8N823 705 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 PCDH19Q8TAB3 1148 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 TBATAQ96M53 351 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 ERP44Q9BS26 406 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 SEC61A2Q9H9S3 476 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 WASH6PQ9NQA3 447 aa4.87□□□□□ -1.63
SCN1A-218ENST00000640036 POLR3BQ9NW08 1133 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-218ENST00000640036 WHRNQ9P202 907 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms