RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	SLC5A12	Q1EHB4	618 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	HLA-B	Q31612	363 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	C14orf28	Q4W4Y0	310 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	C6orf132	Q5T0Z8	1188 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	KLHL35	Q6PF15	583 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	SLC23A3	Q6PIS1	610 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	PRR23B	Q6ZRT6	265 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	MIER2	Q8N344	545 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	FNDC5	Q8NAU1	212 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	ZNF740	Q8NDX6	193 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	TTL	Q8NG68	377 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	FLVCR1-AS1	Q8TAF5	88 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	LOXL4	Q96JB6	756 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	SERPINI1	Q99574	410 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	DPH7	Q9BTV6	452 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	BRINP2	Q9C0B6	783 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	SPNS1	Q9H2V7	528 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	CAPN10	Q9HC96	672 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	SLC6A20	Q9NP91	592 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	AIG1	Q9NVV5	245 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	TMEM45A	Q9NWC5	275 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	HRASLS2	Q9NWW9	162 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	ASIC5	Q9NY37	505 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	ACTR10	Q9NZ32	417 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	NOP53	Q9NZM5	478 aa	Known RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	SLC6A14	Q9UN76	642 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	SLC12A4	Q9UP95	1085 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	EIF3L	Q9Y262	564 aa	Known RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	TMED5	Q9Y3A6	229 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	GPR45	Q9Y5Y3	372 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	IGKV1-8	A0A0C4DH67	115 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	LILRA5	A6NI73	299 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	MAGEB17	A8MXT2	336 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	TNFRSF10A	O00220	468 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	GALR2	O43603	387 aa	Predicted RBP	11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	UNC5C	O95185	931 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	CBX6	O95503	412 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	PRPS2	P11908	318 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	COX4I1	P13073	169 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	ACPP	P15309	386 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	EZR	P15311	586 aa	Known RBP	11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	UGT2B7	P16662	529 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	GPX3	P22352	226 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	MAPK1	P28482	360 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	GRIA3	P42263	894 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	SCTR	P47872	440 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	ACADVL	P49748	655 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	DIO3	P55073	304 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	RPS13	P62277	151 aa	Known RBP	11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	DMTN	Q08495	405 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	KIAA0040	Q15053	153 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	MAPRE2	Q15555	327 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	RFTN2	Q52LD8	501 aa	Predicted RBP	11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	PDCD4	Q53EL6	469 aa	Known RBP	11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	CACHD1	Q5VU97	1274 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	IL23R	Q5VWK5	629 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	KIAA1614	Q5VZ46	1190 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	ARMC6	Q6NXE6	501 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	KANSL1	Q7Z3B3	1105 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	PAQR7	Q86WK9	346 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	OOSP2	Q86WS3	158 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	FAM9C	Q8IZT9	166 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	OR10G6	Q8NH81	332 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	RP9	Q8TA86	221 aa	Known RBP	11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	ZUFSP	Q96AP4	578 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	SARG	Q9BW04	601 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	ACTR5	Q9H9F9	607 aa	Predicted RBP	11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	PRM3	Q9NNZ6	103 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	DMRT3	Q9NQL9	472 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	SDR39U1	Q9NRG7	319 aa	Predicted RBP	11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	NLGN3	Q9NZ94	848 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	ANKMY1	Q9P2S6	941 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	KLK4	Q9Y5K2	254 aa		11.3	□□□□□ -0.6
CLN6-223	ENST00000637823	GSAP	A4D1B5	854 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	OR5K3	A6NET4	321 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	RHPN2P1	A8MT19	583 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	ARHGAP33	O14559	1287 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	ZW10	O43264	779 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	OR1F1	O43749	312 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	LCMT2	O60294	686 aa	Known RBP	11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	MYO1D	O94832	1006 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	UBXN7	O94888	489 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	SYP	P08247	313 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	GIMD1	P0DJR0	217 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	ALPPL2	P10696	532 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	AMD1	P17707	334 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	GSTM2	P28161	218 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	EPHA8	P29322	1005 aa	Predicted RBP	11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	AHR	P35869	848 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	EPHA4	P54764	986 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	RPL38	P63173	70 aa	Known RBP	11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	RELA	Q04206	551 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	CUL3	Q13618	768 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	CYLC2	Q14093	348 aa	Predicted RBP	11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	SPRED3	Q2MJR0	410 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	AGK	Q53H12	422 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	ZNF425	Q6IV72	752 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	SPESP1	Q6UW49	350 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	ADCK2	Q7Z695	626 aa		11.29	□□□□□ -0.6
CLN6-223	ENST00000637823	RNF175	Q8N4F7	328 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms