RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PTRH2Q9Y3E5 179 aaKnown RBP5.43□□□□□ -1.54
CPNE3-208ENST00000614678 HIVEP3Q5T1R4 2406 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 HYKKA2RU49 373 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 SAP18O00422 153 aaKnown RBP5.43□□□□□ -1.54
CPNE3-208ENST00000614678 C2P06681 752 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 MPC1LP0DKB6 136 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 CCR10P46092 362 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 ATP1A2P50993 1020 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 MLLT10P55197 1068 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 RAB8AP61006 207 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 PLOD1Q02809 727 aaPredicted RBP5.43□□□□□ -1.54
CPNE3-208ENST00000614678 HYAL2Q12891 473 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 NCF4Q15080 339 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 ZKSCAN8Q15776 578 aaPredicted RBP5.43□□□□□ -1.54
CPNE3-208ENST00000614678 IGFBP7Q16270 282 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 KIAA0408Q6ZU52 694 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 TMPRSS11BQ86T26 416 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 GPSM1Q86YR5 675 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 DCAKDQ8WVC6 231 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 SMPDL3AQ92484 453 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 RHBDF1Q96CC6 855 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 TEFMQ96QE5 360 aaKnown RBP5.43□□□□□ -1.54
CPNE3-208ENST00000614678 FMO2Q99518 471 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 YIPF2Q9BWQ6 316 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 MFRPQ9BY79 579 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 SNX15Q9NRS6 342 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 TLK1Q9UKI8 766 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 PLCL2Q9UPR0 1127 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 PTPN13Q12923 2485 aa5.43□□□□□ -1.54
CPNE3-208ENST00000614678 A0A1W2PPM1 405 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PRKNO60260 465 aaPredicted RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 CCNYL3P0C7X3 344 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 TFEBP19484 476 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 GP5P40197 560 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 CSRP3P50461 194 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 CKAP4Q07065 602 aaKnown RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 KLC1Q07866 573 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 SLC29A2Q14542 456 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 TTLL9Q3SXZ7 439 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 RHBDD2Q6NTF9 364 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 MRPL14Q6P1L8 145 aaKnown RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 TTC23LQ6PF05 361 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 RAPH1Q70E73 1250 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 RNF44Q7L0R7 432 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 VN1R5Q7Z5H4 357 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 KMT5CQ86Y97 462 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 GPR135Q8IZ08 494 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 FDCSPQ8NFU4 85 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 HMGCLL1Q8TB92 370 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 RUNDC3BQ96NL0 473 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 HBEGFQ99075 208 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PAFAH2Q99487 392 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 EGFL8Q99944 293 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 ZFYVE21Q9BQ24 234 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 NAT9Q9BTE0 207 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 NUDT9Q9BW91 350 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 SGPP1Q9BX95 441 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 CCDC177Q9NQR7 707 aaPredicted RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 SNX7Q9UNH6 387 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PCDHB3Q9Y5E6 796 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 TK2O00142 265 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 RTCAO00442 366 aaKnown RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 KPNA5O15131 536 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 ZNHIT1O43257 154 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 MAN1A2O60476 641 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 HNRNPFP52597 415 aaKnown RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 VSNL1P62760 191 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 TMTC4Q5T4D3 741 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 THOC6Q86W42 341 aaKnown RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 CSNK1A1LQ8N752 337 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 MCOLN3Q8TDD5 553 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 MMABQ96EY8 250 aaPredicted RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 VPS11Q9H270 941 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 IFT80Q9P2H3 777 aaPredicted RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PCNX1Q96RV3 2341 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 OR1F1O43749 312 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 RDH16O75452 317 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PRKRAO75569 313 aaKnown RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 WDR47O94967 919 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PPP2R1BP30154 601 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 RAB10P61026 200 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 NKG7Q16617 165 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PRTGQ2VWP7 1150 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 NADK2Q4G0N4 442 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PPP1R32Q7Z5V6 425 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 LSRQ86X29 649 aaPredicted RBP5.42□□□□□ -1.54
CPNE3-208ENST00000614678 TMEM151AQ8N4L1 468 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 TMEM52Q8NDY8 209 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 OR56A3Q8NH54 315 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 PHF21BQ96EK2 531 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 CABS1Q96KC9 395 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 ZNF285Q96NJ3 590 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 CPNE1Q99829 537 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 TXLNGYQ9BZA5 131 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 ING2Q9H160 280 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 KCND3Q9UK17 655 aa5.42□□□□□ -1.54
CPNE3-208ENST00000614678 SHANK1Q9Y566 2161 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 A0A1W2PS29 197 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 CREB1P16220 341 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 STMN1P16949 149 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms