RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 COX15Q7KZN9 410 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 ZNF740Q8NDX6 193 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 SLC5A11Q8WWX8 675 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 CAVIN3Q969G5 261 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 CLIP3Q96DZ5 547 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 EGFL8Q99944 293 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 VPS11Q9H270 941 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 GPN2Q9H9Y4 310 aaPredicted RBP18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 NUDT4Q9NZJ9 180 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 RNF112Q9ULX5 631 aa18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 RUVBL1Q9Y265 456 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-221ENST00000599833 ATRXP46100 2492 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 FEZF1A0PJY2 475 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 CCDC189A1A4V9 331 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 C21orf140B9A014 251 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 DSCR3O14972 297 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 FURINP09958 794 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 TCN2P20062 427 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 GLRBP48167 497 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 HSPA7P48741 367 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 CYP4F2P78329 520 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 REEP5Q00765 189 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 MEF2AQ02078 507 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 E2F2Q14209 437 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 TAF1BQ53T94 588 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 C1orf189Q5VU69 101 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 FAM69BQ5VUD6 431 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 SULT1C3Q6IMI6 304 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 PCSK4Q6UW60 755 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 TDRPQ86YL5 185 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 CYP4X1Q8N118 509 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 TCAIMQ8N3R3 496 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 PROKR1Q8TCW9 393 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 UBTD2Q8WUN7 234 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 N4BP2L2Q92802 583 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 TSNARE1Q96NA8 513 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 PARD6BQ9BYG5 372 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 CUTCQ9NTM9 273 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 TLK1Q9UKI8 766 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 SRPK3Q9UPE1 567 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 MRPS2Q9Y399 296 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 IKBKGQ9Y6K9 419 aa18.61■□□□□ 0.57
SHKBP1-221ENST00000599833 FOXO6A8MYZ6 492 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 MAP2K7O14733 419 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 WDR47O94967 919 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 HBQ1P09105 142 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 CCNYL3P0C7X3 344 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 AGTR2P50052 363 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 EMP3P54852 163 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 RPS15AP62244 130 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 RPS18P62269 152 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 GRM7Q14831 915 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 RASA2Q15283 850 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 FAM83EQ2M2I3 478 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 CRTC2Q53ET0 693 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 ATP1A1-AS1Q5TC04 95 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 MRPL14Q6P1L8 145 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 NXPE4Q6UWF7 544 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 SLCO4C1Q6ZQN7 724 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 TAOK1Q7L7X3 1001 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 CSNK1A1LQ8N752 337 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 UBLCP1Q8WVY7 318 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 STARD8Q92502 1023 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 MR1Q95460 341 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 MTBPQ96DY7 904 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 DPH2Q9BQC3 489 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 PELI2Q9HAT8 420 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 CD274Q9NZQ7 290 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 PSMC3IPQ9P2W1 217 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 COPG2Q9UBF2 871 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 CFAP46Q8IYW2 2715 aa18.6■□□□□ 0.57
SHKBP1-221ENST00000599833 A0A1B0GX78 115 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 HYKKA2RU49 373 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 NKX2-8O15522 239 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 FOXS1O43638 330 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 KLF7O75840 302 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 IPO13O94829 963 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 RAB40ALP0C0E4 278 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 COL6A2P12110 1019 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 CD22P20273 847 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 VARSP26640 1264 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 CCR8P51685 355 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 FOXL2P58012 376 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 CDC16Q13042 620 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 YOD1Q5VVQ6 348 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 TTLL10Q6ZVT0 673 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 GPR155Q7Z3F1 870 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 ADCK2Q7Z695 626 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 ANKRD53Q8N9V6 530 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 MFSD9Q8NBP5 474 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 TTC9Q92623 222 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 EXT2Q93063 718 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 WDR34Q96EX3 536 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 MACROD1Q9BQ69 325 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 NDC1Q9BTX1 674 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 CD244Q9BZW8 370 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 ACTL8Q9H568 366 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 WWOXQ9NZC7 414 aa18.59■□□□□ 0.57
SHKBP1-221ENST00000599833 LHX6Q9UPM6 363 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms