RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	AURKB	Q96GD4	344 aa	Predicted RBP	11.27	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	RBM4B	Q9BQ04	359 aa	Known RBP	11.27	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	RBM4	Q9BWF3	364 aa	Known RBP	11.27	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	SDR39U1	Q9NRG7	319 aa	Predicted RBP	11.27	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TRNAU1AP	Q9NX07	287 aa	Known RBP	11.27	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	KIF17	Q9P2E2	1029 aa		11.27	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	KCNN3	Q9UGI6	736 aa		11.27	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	VPS4A	Q9UN37	437 aa		11.27	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GOLGA4	Q13439	2230 aa	Known RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	FPGT	O14772	594 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CHEK2	O96017	543 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CKM	P06732	381 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PRKAR1A	P10644	381 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	G6PD	P11413	515 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CYP4B1	P13584	511 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	HMGA1	P17096	107 aa	Known RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PTPN2	P17706	415 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	LAG3	P18627	525 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ACADVL	P49748	655 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	RNF144A	P50876	292 aa	Predicted RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	SMAD3	P84022	425 aa	Known RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	IL10RB	Q08334	325 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PTGR1	Q14914	329 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TGFBI	Q15582	683 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GTDC1	Q4AE62	458 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ZNF697	Q5TEC3	545 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PLPP4	Q5VZY2	271 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	KANK2	Q63ZY3	851 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ERICH5	Q6P6B1	374 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	IL27RA	Q6UWB1	636 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	R3HCC1L	Q7Z5L2	792 aa	Known RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GALNT10	Q86SR1	603 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	DTWD1	Q8N5C7	304 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	SNX19	Q92543	992 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CEP19	Q96LK0	163 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	MYOC	Q99972	504 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	HOPX	Q9BPY8	73 aa	Predicted RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	AARSD1	Q9BTE6	412 aa	Known RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PINK1	Q9BXM7	581 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CERS4	Q9HA82	394 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PDF	Q9HBH1	243 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ITM2C	Q9NQX7	267 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TLR9	Q9NR96	1032 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PKD2L2	Q9NZM6	624 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ABCD2	Q9UBJ2	740 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GMEB2	Q9UKD1	530 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	C19orf53	Q9UNZ5	99 aa	Predicted RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TCRBV5S2	A0A599	114 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ALG1L2	C9J202	215 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063		H0Y858	1186 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063		H7C0S8	307 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	AGRP	O00253	132 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	NPC1	O15118	1278 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	C1QC	P02747	245 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GSN	P06396	782 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	QDPR	P09417	244 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CTPS1	P17812	591 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GK	P32189	559 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PIGA	P37287	484 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	SLC11A2	P49281	568 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	STC1	P52823	247 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	EPHB3	P54753	998 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	RAPSN	Q13702	412 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	LASP1	Q14847	261 aa	Known RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ZRANB3	Q5FWF4	1079 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ANKS6	Q68DC2	871 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GLT6D1	Q7Z4J2	308 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	SLC22A15	Q8IZD6	547 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ADGRG2	Q8IZP9	1017 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CENPS	Q8N2Z9	138 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	MINDY1	Q8N5J2	469 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	DDHD1	Q8NEL9	900 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TRIB3	Q96RU7	358 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TM9SF2	Q99805	663 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	C17orf80	Q9BSJ5	609 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	THUMPD3	Q9BV44	507 aa	Known RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TBC1D23	Q9NUY8	699 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PSME2	Q9UL46	239 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	POLR3H	Q9Y535	204 aa	Predicted RBP	11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PCDHGA11	Q9Y5H2	935 aa		11.26	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063		A0A1W2PP18	115 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	AQP12B	A6NM10	295 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	DRGX	A6NNA5	263 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	UPK3BL1	B0FP48	263 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	UPK3BL2	E5RIL1	263 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GNGT2	O14610	69 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TGM5	O43548	720 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	XPNPEP2	O43895	674 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TLL1	O43897	1013 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	DFNA5	O60443	496 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	NDUFS3	O75489	264 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CCNDBP1	O95273	360 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	MYOG	P15173	224 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	TCEA1	P23193	301 aa	Known RBP	11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GABRR2	P28476	465 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	ZFP36L2	P47974	494 aa	Known RBP	11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	GSS	P48637	474 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	LCP2	Q13094	533 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	RAB33A	Q14088	237 aa		11.25	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	NKG7	Q16617	165 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms